#include <elxEulerStackTransform.h>

Detailed Description

template<class TElastix>
class elastix::EulerStackTransform< TElastix >

A stack transform based on the itk EulerTransforms.

This transform is a rigid body transformation. Calls to TransformPoint and GetJacobian are redirected to the appropriate sub transform based on the last dimension (time) index.

This transform uses the size, spacing and origin of the last dimension of the fixed image to set the number of sub transforms, the origin of the first transform and the spacing between the transforms.

The parameters used in this class are:

Parameters

Transform: Select this transform as follows:
(Transform "EulerStackTransform")

Scales: the scale factor between the rotations and translations, used in the optimizer.
example: (Scales 200000.0)
example: (Scales 100000.0 60000.0 ... 80000.0)
If only one argument is given, that factor is used for the rotations. If more than one argument is given, then the number of arguments should be equal to the number of parameters: for each parameter its scale factor. If this parameter option is not used, by default the rotations are scaled by a factor of 100000.0. See also the AutomaticScalesEstimation parameter.

AutomaticScalesEstimation: if this parameter is set to "true" the Scales parameter is ignored and the scales are determined automatically.
example: ( AutomaticScalesEstimation "true" )
Default: "false" (for backwards compatibility). Recommended: "true".

CenterOfRotation: an index around which the image is rotated.
example: (CenterOfRotation 128 128)

ComputeZYX: whether the order of rotations is ZYX. Default: "false". When false, the order is ZXY.
This parameter is only relevant for 3D transformation (i.e. when the stack transform is 4D), otherwise it is ignored.

The transform parameters necessary for transformix, additionally defined by this class, are:

Transform Parameters

CenterOfRotation: stores the center of rotation as an index.
example: (CenterOfRotation 128 128) deprecated! From elastix version 3.402 this is changed to CenterOfRotationPoint!

CenterOfRotationPoint: stores the center of rotation, expressed in world coordinates.
example: (CenterOfRotationPoint 10.555 6.666)

StackSpacing: stores the spacing between the sub transforms.
exanoke: (StackSpacing 1.0)

StackOrigin: stores the origin of the first sub transform.
exanoke: (StackOrigin 0.0)

NumberOfSubTransforms: stores the number of sub transforms.
exanoke: (NumberOfSubTransforms 10)

Todo

It is unsure what happens when one of the image dimensions has length 1.

The center of rotation point is not transformed with the initial transform yet.

Definition at line 84 of file elxEulerStackTransform.h.

Inheritance diagram for elastix::EulerStackTransform< TElastix >:

[legend]

Public Types
using	CombinationTransformType = typename Superclass2::CombinationTransformType

using	ConstPointer = itk::SmartPointer<const Self>

using	ContinuousIndexType = typename itk::ContinuousIndex<CoordRepType, SpaceDimension>

using	CoordRepType

using	DirectionType = typename FixedImageType::DirectionType

using	EulerTransformPointer = typename EulerTransformType::Pointer

using	EulerTransformType

using	FixedImageType

using	IndexType = typename FixedImageType::IndexType

using	InputPointType = typename EulerTransformType::InputPointType

using	ITKBaseType = typename Superclass2::ITKBaseType

using	MovingImageType

using	ParameterMapType

using	Pointer = itk::SmartPointer<Self>

using	PointType = typename FixedImageType::PointType

using	ReducedDimensionContinuousIndexType = typename itk::ContinuousIndex<CoordRepType, ReducedSpaceDimension>

using	ReducedDimensionDirectionType = typename ReducedDimensionImageType::DirectionType

using	ReducedDimensionEulerTransformPointer = typename ReducedDimensionEulerTransformType::Pointer

using	ReducedDimensionEulerTransformType

using	ReducedDimensionImageType = itk::Image<PixelType, Self::ReducedSpaceDimension>

using	ReducedDimensionIndexType = typename ReducedDimensionRegionType::IndexType

using	ReducedDimensionInputPointType = typename ReducedDimensionEulerTransformType::InputPointType

using	ReducedDimensionOriginType = typename ReducedDimensionImageType::PointType

using	ReducedDimensionOutputVectorType = typename ReducedDimensionEulerTransformType::OutputVectorType

using	ReducedDimensionPointType = typename ReducedDimensionImageType::PointType

using	ReducedDimensionRegionType = itk::ImageRegion<Self::ReducedSpaceDimension>

using	ReducedDimensionSizeType = typename ReducedDimensionImageType::SizeType

using	ReducedDimensionSpacingType = typename ReducedDimensionImageType::SpacingType

using	RegionType = typename FixedImageType::RegionType

using	ScalesType

using	Self = EulerStackTransform

using	SizeType = typename FixedImageType::SizeType

using	SpacingType = typename FixedImageType::SpacingType

using	Superclass1

using	Superclass2 = elx::TransformBase<TElastix>

Public Types inherited from itk::AdvancedCombinationTransform< TScalarType, NDimensions >
using	ConstPointer = SmartPointer<const Self>

using	CurrentTransformConstPointer = typename CurrentTransformType::ConstPointer

using	CurrentTransformInverseTransformBasePointer = typename CurrentTransformType::InverseTransformBasePointer

using	CurrentTransformInverseTransformBaseType = typename CurrentTransformType::InverseTransformBaseType

using	CurrentTransformPointer = typename CurrentTransformType::Pointer

using	CurrentTransformType = Superclass

using	InitialTransformConstPointer = typename InitialTransformType::ConstPointer

using	InitialTransformInverseTransformBasePointer = typename InitialTransformType::InverseTransformBasePointer

using	InitialTransformInverseTransformBaseType = typename InitialTransformType::InverseTransformBaseType

using	InitialTransformPointer = typename InitialTransformType::Pointer

using	InitialTransformType = Superclass

using	InverseTransformBaseType = typename Superclass::InverseTransformBaseType

using	Pointer = SmartPointer<Self>

using	Self = AdvancedCombinationTransform

using	Superclass = AdvancedTransform<TScalarType, NDimensions, NDimensions>

using	TransformType = typename Superclass::TransformType

using	TransformTypeConstPointer = typename TransformType::ConstPointer

using	TransformTypePointer = typename TransformType::Pointer

Public Types inherited from itk::AdvancedTransform< TScalarType, 3, 3 >
using	ConstPointer

using	InternalMatrixType

using	InverseTransformBaseType

using	JacobianOfSpatialHessianType

using	JacobianOfSpatialJacobianType

using	MovingImageGradientType

using	MovingImageGradientValueType

using	NonZeroJacobianIndicesType

using	Pointer

using	Self

using	SpatialHessianType

using	SpatialJacobianType

using	Superclass

using	TransformType

using	TransformTypeConstPointer

using	TransformTypePointer

Public Types inherited from elastix::TransformBase< TElastix >
using	CombinationTransformType = itk::AdvancedCombinationTransform<CoordRepType, Self::FixedImageDimension>

using	CommandLineArgumentMapType = Configuration ::CommandLineArgumentMapType

using	CommandLineEntryType = Configuration ::CommandLineEntryType

using	ComponentDescriptionType = ComponentDatabase::ComponentDescriptionType

using	CoordRepType = ElastixBase::CoordRepType

using	DeformationFieldImageType = itk::Image<VectorPixelType, FixedImageDimension>

using	FixedImageType = typename TElastix::FixedImageType

using	InitialTransformType = typename CombinationTransformType::InitialTransformType

using	InputPointType = typename ITKBaseType::InputPointType

using	ITKBaseType = CombinationTransformType

using	ITKRegistrationType = typename RegistrationType::ITKBaseType

using	MovingImageType = typename TElastix::MovingImageType

using	OptimizerType = typename ITKRegistrationType::OptimizerType

using	OutputPointType = typename ITKBaseType::OutputPointType

using	ParameterMapType = typename TElastix::ParameterMapType

using	ParametersType = itk::OptimizerParameters<ValueType>

using	PtrToCreator = ComponentDatabase::PtrToCreator

using	RegistrationType

using	ScalesType = itk::Optimizer::ScalesType

using	Self = TransformBase

using	SpatialJacobianDeterminantImageType = itk::Image<float, FixedImageDimension>

using	SpatialJacobianMatrixImageType

using	Superclass = BaseComponentSE<TElastix>

using	ValueType = double

using	VectorPixelType = itk::Vector<float, FixedImageDimension>

Public Types inherited from elastix::BaseComponentSE< TElastix >
using	ElastixType = TElastix

using	RegistrationType = typename ElastixType::RegistrationBaseType

using	Self = BaseComponentSE

using	Superclass = BaseComponent

Public Member Functions
int	BeforeAll () override

void	BeforeRegistration () override

	elxClassNameMacro ("EulerStackTransform")

virtual const char *	GetClassName () const

virtual void	InitialTransformCenter (ReducedDimensionInputPointType &point)

	ITK_DISALLOW_COPY_AND_MOVE (EulerStackTransform)

	itkStaticConstMacro (ReducedSpaceDimension, unsigned int, Superclass2::FixedImageDimension - 1)

	itkStaticConstMacro (SpaceDimension, unsigned int, Superclass2::FixedImageDimension)

void	ReadFromFile () override

virtual void	SetScales ()

Public Member Functions inherited from itk::AdvancedCombinationTransform< TScalarType, NDimensions >
void	EvaluateJacobianWithImageGradientProduct (const InputPointType &inputPoint, const MovingImageGradientType &movingImageGradient, DerivativeType &imageJacobian, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

const FixedParametersType &	GetFixedParameters () const override

bool	GetHasNonZeroSpatialHessian () const override

bool	GetInverse (Self *inverse) const

void	GetJacobian (const InputPointType &inputPoint, JacobianType &j, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

void	GetJacobianOfSpatialHessian (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

void	GetJacobianOfSpatialHessian (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

void	GetJacobianOfSpatialJacobian (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

void	GetJacobianOfSpatialJacobian (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override

const TransformTypePointer	GetNthTransform (SizeValueType n) const

NumberOfParametersType	GetNumberOfNonZeroJacobianIndices () const override

NumberOfParametersType	GetNumberOfParameters () const override

SizeValueType	GetNumberOfTransforms () const

const ParametersType &	GetParameters () const override

void	GetSpatialHessian (const InputPointType &inputPoint, SpatialHessianType &sh) const override

void	GetSpatialJacobian (const InputPointType &inputPoint, SpatialJacobianType &sj) const override

TransformCategoryEnum	GetTransformCategory () const override

virtual bool	GetUseAddition () const

virtual bool	GetUseComposition () const

bool	HasNonZeroJacobianOfSpatialHessian () const

bool	IsLinear () const override

	ITK_DISALLOW_COPY_AND_MOVE (AdvancedCombinationTransform)

	itkGetModifiableObjectMacro (CurrentTransform, CurrentTransformType)

	itkGetModifiableObjectMacro (InitialTransform, InitialTransformType)

	itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions)

void	SetCurrentTransform (CurrentTransformType *_arg)

void	SetFixedParameters (const FixedParametersType &fixedParam) override

void	SetInitialTransform (InitialTransformType *_arg)

void	SetParameters (const ParametersType &param) override

void	SetParametersByValue (const ParametersType &param) override

void	SetUseAddition (bool _arg)

void	SetUseComposition (bool _arg)

OutputCovariantVectorType	TransformCovariantVector (const InputCovariantVectorType &) const override

OutputPointType	TransformPoint (const InputPointType &point) const override

OutputVectorType	TransformVector (const InputVectorType &) const override

OutputVnlVectorType	TransformVector (const InputVnlVectorType &) const override

Public Member Functions inherited from itk::AdvancedTransform< TScalarType, 3, 3 >
void	ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &) const override

virtual bool	GetHasNonZeroJacobianOfSpatialHessian () const

	ITK_DISALLOW_COPY_AND_MOVE (AdvancedTransform)

	itkStaticConstMacro (InputSpaceDimension, unsigned int, NInputDimensions)

	itkStaticConstMacro (OutputSpaceDimension, unsigned int, NOutputDimensions)

Public Member Functions inherited from elastix::TransformBase< TElastix >
int	BeforeAllTransformix ()

void	ComputeAndWriteSpatialJacobianDeterminantImage () const

void	ComputeAndWriteSpatialJacobianMatrixImage () const

SpatialJacobianDeterminantImageType::Pointer	ComputeSpatialJacobianDeterminantImage () const

SpatialJacobianMatrixImageType::Pointer	ComputeSpatialJacobianMatrixImage () const

void	CreateTransformParameterMap (const ParametersType &param, ParameterMapType &parameterMap, const bool includeDerivedTransformParameters=true) const

ITKBaseType *	GetAsITKBaseType ()

const ITKBaseType *	GetAsITKBaseType () const

	ITK_DISALLOW_COPY_AND_MOVE (TransformBase)

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

void	ReadInitialTransformFromFile (const std::string &transformParameterFileName)

void	SetFinalParameters ()

void	SetInitialTransform (InitialTransformType *_arg)

void	SetReadWriteTransformParameters (const bool _arg)

void	SetTransformParameterFileName (const std::string &filename)

template<typename TMesh >
TMesh::Pointer	TransformMesh (const TMesh &mesh) const

void	TransformPoints () const

void	WriteToFile (std::ostream &transformationParameterInfo, const ParametersType &param) const

Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
void	AddTargetCellToIterationInfo (const char *const name)

const Configuration *	GetConfiguration () const

ElastixType *	GetElastix () const

auto &	GetIterationInfoAt (const char *const name)

RegistrationType *	GetRegistration () const

	ITK_DISALLOW_COPY_AND_MOVE (BaseComponentSE)

void	RemoveTargetCellFromIterationInfo (const char *const name)

void	SetConfiguration (const Configuration *_arg)

void	SetElastix (ElastixType *_arg)

Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration ()

virtual void	AfterEachIterationBase ()

virtual void	AfterEachResolution ()

virtual void	AfterEachResolutionBase ()

virtual void	AfterRegistration ()

virtual void	BeforeEachResolution ()

virtual void	BeforeEachResolutionBase ()

virtual const char *	elxGetClassName () const

const char *	GetComponentLabel () const

	ITK_DISALLOW_COPY_AND_MOVE (BaseComponent)

	itkTypeMacroNoParent (BaseComponent)

void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::AdvancedCombinationTransform< TScalarType, NDimensions >
static Pointer	New ()

Static Public Member Functions inherited from elastix::BaseComponent
template<typename TBaseComponent >
static auto	AsITKBaseType (TBaseComponent *const baseComponent) -> decltype(baseComponent->GetAsITKBaseType())

static void	InitializeElastixExecutable ()

static bool	IsElastixLibrary ()

Protected Member Functions
	EulerStackTransform ()

virtual bool	ReadCenterOfRotationPoint (ReducedDimensionInputPointType &rotationPoint) const

	~EulerStackTransform () override=default

Protected Member Functions inherited from itk::AdvancedCombinationTransform< TScalarType, NDimensions >
	AdvancedCombinationTransform ()

void	EvaluateJacobianWithImageGradientProductNoCurrentTransform (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

void	EvaluateJacobianWithImageGradientProductNoInitialTransform (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

void	EvaluateJacobianWithImageGradientProductUseAddition (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

void	EvaluateJacobianWithImageGradientProductUseComposition (const InputPointType &, const MovingImageGradientType &, DerivativeType &, NonZeroJacobianIndicesType &) const

void	GetJacobianNoCurrentTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

void	GetJacobianNoInitialTransform (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

void	GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianNoCurrentTransform (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianNoInitialTransform (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianUseAddition (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianUseAddition (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianUseComposition (const InputPointType &inputPoint, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialHessianUseComposition (const InputPointType &inputPoint, SpatialHessianType &sh, JacobianOfSpatialHessianType &jsh, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianNoCurrentTransform (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianNoInitialTransform (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianUseAddition (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianUseAddition (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianUseComposition (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianOfSpatialJacobianUseComposition (const InputPointType &inputPoint, SpatialJacobianType &sj, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const

void	GetJacobianUseAddition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

void	GetJacobianUseComposition (const InputPointType &, JacobianType &, NonZeroJacobianIndicesType &) const

void	GetSpatialHessianNoCurrentTransform (const InputPointType &inputPoint, SpatialHessianType &sh) const

void	GetSpatialHessianNoInitialTransform (const InputPointType &inputPoint, SpatialHessianType &sh) const

void	GetSpatialHessianUseAddition (const InputPointType &inputPoint, SpatialHessianType &sh) const

void	GetSpatialHessianUseComposition (const InputPointType &inputPoint, SpatialHessianType &sh) const

void	GetSpatialJacobianNoCurrentTransform (const InputPointType &inputPoint, SpatialJacobianType &sj) const

void	GetSpatialJacobianNoInitialTransform (const InputPointType &inputPoint, SpatialJacobianType &sj) const

void	GetSpatialJacobianUseAddition (const InputPointType &inputPoint, SpatialJacobianType &sj) const

void	GetSpatialJacobianUseComposition (const InputPointType &inputPoint, SpatialJacobianType &sj) const

OutputPointType	TransformPointNoCurrentTransform (const InputPointType &point) const

OutputPointType	TransformPointNoInitialTransform (const InputPointType &point) const

OutputPointType	TransformPointUseAddition (const InputPointType &point) const

OutputPointType	TransformPointUseComposition (const InputPointType &point) const

void	UpdateCombinationMethod ()

	~AdvancedCombinationTransform () override=default

Protected Member Functions inherited from itk::AdvancedTransform< TScalarType, 3, 3 >
	AdvancedTransform ()=default

	~AdvancedTransform () override=default

Protected Member Functions inherited from elastix::TransformBase< TElastix >
void	AutomaticScalesEstimation (ScalesType &scales) const

void	AutomaticScalesEstimationStackTransform (const unsigned int numSubTransforms, ScalesType &scales) const

bool	HasITKTransformParameters () const

	TransformBase ()=default

	~TransformBase () override=default

Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()=default

	~BaseComponentSE () override=default

Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()=default

virtual	~BaseComponent ()=default

Private Types
using	StackTransformType = itk::EulerStackTransform<SpaceDimension>

Private Member Functions
ParameterMapType	CreateDerivedTransformParameterMap () const override

unsigned int	InitializeEulerTransform ()

void	InitializeTransform ()

Private Attributes
	elxOverrideGetSelfMacro

ReducedDimensionEulerTransformPointer	m_DummySubTransform

unsigned int	m_NumberOfSubTransforms

double	m_StackOrigin

double	m_StackSpacing

const StackTransformType::Pointer	m_StackTransform { StackTransformType::New() }

Additional Inherited Members
Protected Attributes inherited from itk::AdvancedTransform< TScalarType, 3, 3 >
bool	m_HasNonZeroJacobianOfSpatialHessian

bool	m_HasNonZeroSpatialHessian

Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
Configuration::ConstPointer	m_Configuration {}

itk::WeakPointer< TElastix >	m_Elastix {}

RegistrationType *	m_Registration {}

Member Typedef Documentation

◆ CombinationTransformType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::CombinationTransformType = typename Superclass2::CombinationTransformType

Definition at line 144 of file elxEulerStackTransform.h.

◆ ConstPointer

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::ConstPointer = itk::SmartPointer<const Self>

Definition at line 98 of file elxEulerStackTransform.h.

◆ ContinuousIndexType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::ContinuousIndexType = typename itk::ContinuousIndex<CoordRepType, SpaceDimension>

Definition at line 168 of file elxEulerStackTransform.h.

◆ CoordRepType

template<class TElastix >

using elastix::TransformBase< TElastix >::CoordRepType

Elastix typedef's.

Definition at line 156 of file elxTransformBase.h.

◆ DirectionType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::DirectionType = typename FixedImageType::DirectionType

Definition at line 166 of file elxEulerStackTransform.h.

◆ EulerTransformPointer

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::EulerTransformPointer = typename EulerTransformType::Pointer

Definition at line 121 of file elxEulerStackTransform.h.

◆ EulerTransformType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::EulerTransformType

Initial value:

itk::EulerTransform<typename elx::TransformBase<TElastix>::CoordRepType, Self::SpaceDimension>

itk::EulerTransform

This class combines the Euler2DTransform with the Euler3DTransform.

Definition itkEulerTransform.h:89

The ITK-class that provides most of the functionality, and that is set as the "CurrentTransform" in the CombinationTransform.

Definition at line 119 of file elxEulerStackTransform.h.

◆ FixedImageType

template<class TElastix >

using elastix::TransformBase< TElastix >::FixedImageType

Definition at line 157 of file elxTransformBase.h.

◆ IndexType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::IndexType = typename FixedImageType::IndexType

Other typedef's.

Definition at line 161 of file elxEulerStackTransform.h.

◆ InputPointType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::InputPointType = typename EulerTransformType::InputPointType

Definition at line 122 of file elxEulerStackTransform.h.

◆ ITKBaseType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::ITKBaseType = typename Superclass2::ITKBaseType

Definition at line 143 of file elxEulerStackTransform.h.

◆ MovingImageType

template<class TElastix >

using elastix::TransformBase< TElastix >::MovingImageType

Definition at line 158 of file elxTransformBase.h.

◆ ParameterMapType

template<class TElastix >

using elastix::TransformBase< TElastix >::ParameterMapType

Typedef that is used in the elastix dll version.

Definition at line 199 of file elxTransformBase.h.

◆ Pointer

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::Pointer = itk::SmartPointer<Self>

Definition at line 97 of file elxEulerStackTransform.h.

◆ PointType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::PointType = typename FixedImageType::PointType

Definition at line 163 of file elxEulerStackTransform.h.

◆ ReducedDimensionContinuousIndexType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::ReducedDimensionContinuousIndexType = typename itk::ContinuousIndex<CoordRepType, ReducedSpaceDimension>

Definition at line 167 of file elxEulerStackTransform.h.

◆ ReducedDimensionDirectionType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::ReducedDimensionDirectionType = typename ReducedDimensionImageType::DirectionType

Definition at line 154 of file elxEulerStackTransform.h.

◆ ReducedDimensionEulerTransformPointer

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::ReducedDimensionEulerTransformPointer = typename ReducedDimensionEulerTransformType::Pointer

Definition at line 127 of file elxEulerStackTransform.h.

◆ ReducedDimensionEulerTransformType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::ReducedDimensionEulerTransformType

Initial value:

itk::EulerTransform<typename elx::TransformBase<TElastix>::CoordRepType, Self::ReducedSpaceDimension>

The ITK-class for the sub transforms, which have a reduced dimension.

Definition at line 125 of file elxEulerStackTransform.h.

◆ ReducedDimensionImageType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::ReducedDimensionImageType = itk::Image<PixelType, Self::ReducedSpaceDimension>

Definition at line 148 of file elxEulerStackTransform.h.

◆ ReducedDimensionIndexType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::ReducedDimensionIndexType = typename ReducedDimensionRegionType::IndexType

Definition at line 152 of file elxEulerStackTransform.h.

◆ ReducedDimensionInputPointType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::ReducedDimensionInputPointType = typename ReducedDimensionEulerTransformType::InputPointType

Definition at line 130 of file elxEulerStackTransform.h.

◆ ReducedDimensionOriginType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::ReducedDimensionOriginType = typename ReducedDimensionImageType::PointType

Definition at line 155 of file elxEulerStackTransform.h.

◆ ReducedDimensionOutputVectorType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::ReducedDimensionOutputVectorType = typename ReducedDimensionEulerTransformType::OutputVectorType

Definition at line 129 of file elxEulerStackTransform.h.

◆ ReducedDimensionPointType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::ReducedDimensionPointType = typename ReducedDimensionImageType::PointType

Definition at line 150 of file elxEulerStackTransform.h.

◆ ReducedDimensionRegionType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::ReducedDimensionRegionType = itk::ImageRegion<Self::ReducedSpaceDimension>

Definition at line 149 of file elxEulerStackTransform.h.

◆ ReducedDimensionSizeType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::ReducedDimensionSizeType = typename ReducedDimensionImageType::SizeType

Definition at line 151 of file elxEulerStackTransform.h.

◆ ReducedDimensionSpacingType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::ReducedDimensionSpacingType = typename ReducedDimensionImageType::SpacingType

Definition at line 153 of file elxEulerStackTransform.h.

◆ RegionType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::RegionType = typename FixedImageType::RegionType

Definition at line 165 of file elxEulerStackTransform.h.

◆ ScalesType

template<class TElastix >

using elastix::TransformBase< TElastix >::ScalesType

Definition at line 190 of file elxTransformBase.h.

◆ Self

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::Self = EulerStackTransform

Standard ITK-stuff.

Definition at line 93 of file elxEulerStackTransform.h.

◆ SizeType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::SizeType = typename FixedImageType::SizeType

Definition at line 162 of file elxEulerStackTransform.h.

◆ SpacingType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::SpacingType = typename FixedImageType::SpacingType

Definition at line 164 of file elxEulerStackTransform.h.

◆ StackTransformType

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::StackTransformType = itk::EulerStackTransform<SpaceDimension>

private

The deleted copy constructor and assignment operator. Typedef for stack transform.

Definition at line 229 of file elxEulerStackTransform.h.

◆ Superclass1

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::Superclass1

Initial value:

itk::AdvancedCombinationTransform<typename elx::TransformBase<TElastix>::CoordRepType,

elx::TransformBase<TElastix>::FixedImageDimension>

elastix::TransformBase

This class is the elastix base class for all Transforms.

Definition elxTransformBase.h:138

itk::AdvancedCombinationTransform

This class combines two transforms: an 'initial transform' with a 'current transform'.

Definition itkAdvancedCombinationTransform.h:57

Definition at line 94 of file elxEulerStackTransform.h.

◆ Superclass2

template<class TElastix >

using elastix::EulerStackTransform< TElastix >::Superclass2 = elx::TransformBase<TElastix>

Definition at line 96 of file elxEulerStackTransform.h.

Constructor & Destructor Documentation

◆ EulerStackTransform()

template<class TElastix >

elastix::EulerStackTransform< TElastix >::EulerStackTransform ( )

inlineprotected

The constructor.

Definition at line 203 of file elxEulerStackTransform.h.

◆ ~EulerStackTransform()

template<class TElastix >

elastix::EulerStackTransform< TElastix >::~EulerStackTransform ( )

overrideprotecteddefault

The destructor.

Member Function Documentation

◆ BeforeAll()

template<class TElastix >

int elastix::EulerStackTransform< TElastix >::BeforeAll ( )

overridevirtual

Execute stuff before anything else is done:

Reimplemented from elastix::BaseComponent.

◆ BeforeRegistration()

template<class TElastix >

void elastix::EulerStackTransform< TElastix >::BeforeRegistration ( )

overridevirtual

Execute stuff before the actual registration:

Set the stack transform parameters.
Set initial sub transforms.
Create initial registration parameters.

Reimplemented from elastix::BaseComponent.

◆ CreateDerivedTransformParameterMap()

template<class TElastix >

ParameterMapType elastix::EulerStackTransform< TElastix >::CreateDerivedTransformParameterMap ( ) const

overrideprivatevirtual

Creates a map of the parameters specific for this (derived) transform type.

Implements elastix::TransformBase< TElastix >.

◆ elxClassNameMacro()

template<class TElastix >

elastix::EulerStackTransform< TElastix >::elxClassNameMacro ( "EulerStackTransform< TElastix >" )

Name of this class. Use this name in the parameter file to select this specific transform.
example: (Transform "EulerStackTransform")

◆ GetClassName()

template<class TElastix >

virtual const char * elastix::EulerStackTransform< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::AdvancedCombinationTransform< TScalarType, NDimensions >.

◆ InitializeEulerTransform()

template<class TElastix >

unsigned int elastix::EulerStackTransform< TElastix >::InitializeEulerTransform ( )

private

Initialize the affine transform.

◆ InitializeTransform()

template<class TElastix >

void elastix::EulerStackTransform< TElastix >::InitializeTransform ( )

private

Method initialize the parameters (to 0).

◆ InitialTransformCenter()

template<class TElastix >

virtual void elastix::EulerStackTransform< TElastix >::InitialTransformCenter ( ReducedDimensionInputPointType & point )

virtual

Function to rotate center of rotation point using initial transformation.

◆ ITK_DISALLOW_COPY_AND_MOVE()

template<class TElastix >

elastix::EulerStackTransform< TElastix >::ITK_DISALLOW_COPY_AND_MOVE ( EulerStackTransform< TElastix > )

◆ itkStaticConstMacro() [1/2]

template<class TElastix >

elastix::EulerStackTransform< TElastix >::itkStaticConstMacro	(	ReducedSpaceDimension	,
		unsigned int	,
		Superclass2::FixedImageDimension -	1 )

◆ itkStaticConstMacro() [2/2]

template<class TElastix >

elastix::EulerStackTransform< TElastix >::itkStaticConstMacro	(	SpaceDimension	,
		unsigned int	,
		Superclass2::FixedImageDimension	)

(Reduced) dimension of the fixed image.

◆ New()

template<class TElastix >

static Pointer elastix::EulerStackTransform< TElastix >::New ( )

static

Method for creation through the object factory.

◆ ReadCenterOfRotationPoint()

template<class TElastix >

virtual bool elastix::EulerStackTransform< TElastix >::ReadCenterOfRotationPoint ( ReducedDimensionInputPointType & rotationPoint ) const

protectedvirtual

Try to read the CenterOfRotationPoint from the transform parameter file The CenterOfRotationPoint is already in world coordinates. Transform parameter files generated by elastix version > 3.402 save the center of rotation in this way.

◆ ReadFromFile()

template<class TElastix >

void elastix::EulerStackTransform< TElastix >::ReadFromFile ( )

overridevirtual

Function to read transform-parameters from a file.

Reimplemented from elastix::TransformBase< TElastix >.

◆ SetScales()

template<class TElastix >

virtual void elastix::EulerStackTransform< TElastix >::SetScales ( )

virtual

Set the scales

If AutomaticScalesEstimation is "true" estimate scales
If scales are provided by the user use those,
Otherwise use some default value This function is called by BeforeRegistration, after the InitializeTransform function is called

Field Documentation

◆ elxOverrideGetSelfMacro

template<class TElastix >

elastix::EulerStackTransform< TElastix >::elxOverrideGetSelfMacro

private

Definition at line 217 of file elxEulerStackTransform.h.

◆ m_DummySubTransform

template<class TElastix >

ReducedDimensionEulerTransformPointer elastix::EulerStackTransform< TElastix >::m_DummySubTransform

private

Dummy sub transform to be used to set sub transforms of stack transform.

Definition at line 235 of file elxEulerStackTransform.h.

◆ m_NumberOfSubTransforms

template<class TElastix >

unsigned int elastix::EulerStackTransform< TElastix >::m_NumberOfSubTransforms

private

Stack variables.

Definition at line 238 of file elxEulerStackTransform.h.

◆ m_StackOrigin

template<class TElastix >

double elastix::EulerStackTransform< TElastix >::m_StackOrigin

private

Definition at line 239 of file elxEulerStackTransform.h.

◆ m_StackSpacing

template<class TElastix >

double elastix::EulerStackTransform< TElastix >::m_StackSpacing

private

Definition at line 239 of file elxEulerStackTransform.h.

◆ m_StackTransform

template<class TElastix >

const StackTransformType::Pointer elastix::EulerStackTransform< TElastix >::m_StackTransform { StackTransformType::New() }

private

The Affine stack transform.

Definition at line 232 of file elxEulerStackTransform.h.

Detailed Description

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Private Types

Private Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

◆ CombinationTransformType

◆ ConstPointer

◆ ContinuousIndexType

◆ CoordRepType

◆ DirectionType

◆ EulerTransformPointer

◆ EulerTransformType

◆ FixedImageType

◆ IndexType

◆ InputPointType

◆ ITKBaseType

◆ MovingImageType

◆ ParameterMapType

◆ Pointer

◆ PointType

◆ ReducedDimensionContinuousIndexType

◆ ReducedDimensionDirectionType

◆ ReducedDimensionEulerTransformPointer

◆ ReducedDimensionEulerTransformType

◆ ReducedDimensionImageType

◆ ReducedDimensionIndexType

◆ ReducedDimensionInputPointType

◆ ReducedDimensionOriginType

◆ ReducedDimensionOutputVectorType

◆ ReducedDimensionPointType

◆ ReducedDimensionRegionType

◆ ReducedDimensionSizeType

◆ ReducedDimensionSpacingType

◆ RegionType

◆ ScalesType

◆ Self

◆ SizeType

◆ SpacingType

◆ StackTransformType

◆ Superclass1

◆ Superclass2

Constructor & Destructor Documentation

◆ EulerStackTransform()

◆ ~EulerStackTransform()

Member Function Documentation

◆ BeforeAll()

◆ BeforeRegistration()

◆ CreateDerivedTransformParameterMap()

◆ elxClassNameMacro()

◆ GetClassName()

◆ InitializeEulerTransform()

◆ InitializeTransform()

◆ InitialTransformCenter()

◆ ITK_DISALLOW_COPY_AND_MOVE()

◆ itkStaticConstMacro() [1/2]

◆ itkStaticConstMacro() [2/2]

◆ New()

◆ ReadCenterOfRotationPoint()

◆ ReadFromFile()

◆ SetScales()

Field Documentation

◆ elxOverrideGetSelfMacro

◆ m_DummySubTransform

◆ m_NumberOfSubTransforms

◆ m_StackOrigin

◆ m_StackSpacing

◆ m_StackTransform