elastix::ResamplerBase< TElastix > Class Template Reference

#include <elxResamplerBase.h>

Detailed Description

template<class TElastix>
class elastix::ResamplerBase< TElastix >

Definition at line 77 of file elxResamplerBase.h.

Inheritance diagram for elastix::ResamplerBase< TElastix >:

Public Types
using	CoordRepType = ElastixBase::CoordRepType
using	DirectionType = typename ITKBaseType::DirectionType
using	ElastixType
using	IndexType = typename ITKBaseType::IndexType
using	InputImageType = typename ElastixType::MovingImageType
using	InterpolatorType = typename ITKBaseType::InterpolatorType
using	ITKBaseType = itk::ResampleImageFilter<InputImageType, OutputImageType, CoordRepType>
using	OriginPointType = typename ITKBaseType::OriginPointType
using	OutputImageType = typename ElastixType::MovingImageType
using	OutputPixelType = typename ITKBaseType::PixelType
using	ParameterMapType = typename ElastixType::ParameterMapType
using	RegistrationType
using	Self = ResamplerBase
using	SizeType = typename ITKBaseType::SizeType
using	SpacingType = typename ITKBaseType::SpacingType
using	Superclass = BaseComponentSE<TElastix>
using	TransformType = typename ITKBaseType::TransformType
Public Types inherited from elastix::BaseComponentSE< TElastix >
using	ElastixType = TElastix
using	RegistrationType = typename ElastixType::RegistrationBaseType
using	Self = BaseComponentSE
using	Superclass = BaseComponent

Public Member Functions
void	AfterEachIterationBase () override
void	AfterEachResolutionBase () override
void	AfterRegistrationBase () override
virtual int	BeforeAllTransformix ()
void	BeforeRegistrationBase () override
virtual void	CreateItkResultImage ()
void	CreateTransformParameterMap (ParameterMapType &parameterMap) const
ITKBaseType *	GetAsITKBaseType ()
const ITKBaseType *	GetAsITKBaseType () const
virtual const char *	GetClassName () const
	ITK_DISALLOW_COPY_AND_MOVE (ResamplerBase)
	itkStaticConstMacro (ImageDimension, unsigned int, OutputImageType::ImageDimension)
virtual void	ReadFromFile ()
void	ResampleAndWriteResultImage (const std::string &filename, const bool showProgress)
void	WriteToFile (std::ostream &transformationParameterInfo) const
Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
void	AddTargetCellToIterationInfo (const char *const name)
const Configuration *	GetConfiguration () const
ElastixType *	GetElastix () const
auto &	GetIterationInfoAt (const char *const name)
RegistrationType *	GetRegistration () const
	ITK_DISALLOW_COPY_AND_MOVE (BaseComponentSE)
void	RemoveTargetCellFromIterationInfo (const char *const name)
void	SetConfiguration (const Configuration *_arg)
void	SetElastix (ElastixType *_arg)
Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration ()
virtual void	AfterEachResolution ()
virtual void	AfterRegistration ()
virtual int	BeforeAll ()
virtual int	BeforeAllBase ()
virtual void	BeforeEachResolution ()
virtual void	BeforeEachResolutionBase ()
virtual void	BeforeRegistration ()
virtual const char *	elxGetClassName () const
const char *	GetComponentLabel () const
	ITK_DISALLOW_COPY_AND_MOVE (BaseComponent)
	itkTypeMacroNoParent (BaseComponent)
void	SetComponentLabel (const char *label, unsigned int idx)

Protected Member Functions
	ResamplerBase ()=default
virtual void	SetComponents ()
	~ResamplerBase () override=default
Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()=default
	~BaseComponentSE () override=default
Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()=default
virtual	~BaseComponent ()=default

Private Member Functions
template<typename TResultPixel >
itk::SmartPointer< itk::ImageBase< ImageDimension > >	CastImage (const InputImageType *const inputImage) const
virtual ParameterMapType	CreateDerivedTransformParameterMap () const
	elxDeclarePureVirtualGetSelfMacro (ITKBaseType)
void	ReleaseMemory ()
void	WriteResultImage (OutputImageType *imageimage, const std::string &filename, const bool showProgress)

Additional Inherited Members
Static Public Member Functions inherited from elastix::BaseComponent
template<typename TBaseComponent >
static auto	AsITKBaseType (TBaseComponent *const baseComponent) -> decltype(baseComponent->GetAsITKBaseType())
static void	InitializeElastixExecutable ()
static bool	IsElastixLibrary ()
Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
Configuration::ConstPointer	m_Configuration {}
itk::WeakPointer< TElastix >	m_Elastix {}
RegistrationType *	m_Registration {}

Member Typedef Documentation

CoordRepType

template<class TElastix >

using elastix::ResamplerBase< TElastix >::CoordRepType = ElastixBase::CoordRepType

Definition at line 98 of file elxResamplerBase.h.

DirectionType

template<class TElastix >

using elastix::ResamplerBase< TElastix >::DirectionType = typename ITKBaseType::DirectionType

Definition at line 109 of file elxResamplerBase.h.

ElastixType

template<class TElastix >

using elastix::BaseComponentSE< TElastix >::ElastixType

Elastix typedef.

Definition at line 57 of file elxBaseComponentSE.h.

IndexType

template<class TElastix >

using elastix::ResamplerBase< TElastix >::IndexType = typename ITKBaseType::IndexType

Definition at line 107 of file elxResamplerBase.h.

InputImageType

template<class TElastix >

using elastix::ResamplerBase< TElastix >::InputImageType = typename ElastixType::MovingImageType

Typedef's from elastix. NB: it is assumed that fixed and moving image dimension are equal!

Definition at line 95 of file elxResamplerBase.h.

InterpolatorType

template<class TElastix >

using elastix::ResamplerBase< TElastix >::InterpolatorType = typename ITKBaseType::InterpolatorType

Definition at line 105 of file elxResamplerBase.h.

ITKBaseType

template<class TElastix >

using elastix::ResamplerBase< TElastix >::ITKBaseType = itk::ResampleImageFilter<InputImageType, OutputImageType, CoordRepType>

Other typedef's.

Definition at line 101 of file elxResamplerBase.h.

OriginPointType

template<class TElastix >

using elastix::ResamplerBase< TElastix >::OriginPointType = typename ITKBaseType::OriginPointType

Definition at line 110 of file elxResamplerBase.h.

OutputImageType

template<class TElastix >

using elastix::ResamplerBase< TElastix >::OutputImageType = typename ElastixType::MovingImageType

Definition at line 96 of file elxResamplerBase.h.

OutputPixelType

template<class TElastix >

using elastix::ResamplerBase< TElastix >::OutputPixelType = typename ITKBaseType::PixelType

Definition at line 111 of file elxResamplerBase.h.

ParameterMapType

template<class TElastix >

using elastix::ResamplerBase< TElastix >::ParameterMapType = typename ElastixType::ParameterMapType

Typedef that is used in the elastix dll version.

Definition at line 114 of file elxResamplerBase.h.

RegistrationType

template<class TElastix >

using elastix::BaseComponentSE< TElastix >::RegistrationType

RegistrationType; NB: this is the elx::RegistrationBase not an itk::Object or something like that.

Definition at line 62 of file elxBaseComponentSE.h.

Self

template<class TElastix >

using elastix::ResamplerBase< TElastix >::Self = ResamplerBase

Standard ITK stuff.

Definition at line 83 of file elxResamplerBase.h.

SizeType

template<class TElastix >

using elastix::ResamplerBase< TElastix >::SizeType = typename ITKBaseType::SizeType

Definition at line 106 of file elxResamplerBase.h.

SpacingType

template<class TElastix >

using elastix::ResamplerBase< TElastix >::SpacingType = typename ITKBaseType::SpacingType

Definition at line 108 of file elxResamplerBase.h.

Superclass

template<class TElastix >

using elastix::ResamplerBase< TElastix >::Superclass = BaseComponentSE<TElastix>

Definition at line 84 of file elxResamplerBase.h.

TransformType

template<class TElastix >

using elastix::ResamplerBase< TElastix >::TransformType = typename ITKBaseType::TransformType

Typedef's from ResampleImageFiler.

Definition at line 104 of file elxResamplerBase.h.

Constructor & Destructor Documentation

ResamplerBase()

template<class TElastix >

elastix::ResamplerBase< TElastix >::ResamplerBase ( )

protecteddefault

The constructor.

~ResamplerBase()

template<class TElastix >

elastix::ResamplerBase< TElastix >::~ResamplerBase ( )

overrideprotecteddefault

The destructor.

Member Function Documentation

AfterEachIterationBase()

template<class TElastix >

void elastix::ResamplerBase< TElastix >::AfterEachIterationBase ( )

overridevirtual

Execute stuff after each iteration:

• Write the resulting output image.

Reimplemented from elastix::BaseComponent.

AfterEachResolutionBase()

template<class TElastix >

void elastix::ResamplerBase< TElastix >::AfterEachResolutionBase ( )

overridevirtual

Execute stuff after each resolution:

• Write the resulting output image.

Reimplemented from elastix::BaseComponent.

AfterRegistrationBase()

template<class TElastix >

void elastix::ResamplerBase< TElastix >::AfterRegistrationBase ( )

overridevirtual

Execute stuff after the registration:

• Write the resulting output image.

Reimplemented from elastix::BaseComponent.

BeforeAllTransformix()

template<class TElastix >

virtual int elastix::ResamplerBase< TElastix >::BeforeAllTransformix ( )

inlinevirtual

Execute stuff before the actual transformation:

• nothing here

Definition at line 139 of file elxResamplerBase.h.

BeforeRegistrationBase()

template<class TElastix >

void elastix::ResamplerBase< TElastix >::BeforeRegistrationBase ( )

overridevirtual

Execute stuff before the actual registration:

• Set all components into the resampler, such as the transform interpolator, input.
• Set output image information, such as size, spacing, etc.
• Set the default pixel value.

Reimplemented from elastix::BaseComponent.

CastImage()

template<class TElastix >

template<typename TResultPixel >

itk::SmartPointer< itk::ImageBase< ImageDimension > > elastix::ResamplerBase< TElastix >::CastImage ( const InputImageType *const inputImage ) const

inlineprivate

Casts the specified input image to the image type with the specified pixel type.

Definition at line 221 of file elxResamplerBase.h.

CreateDerivedTransformParameterMap()

template<class TElastix >

virtual ParameterMapType elastix::ResamplerBase< TElastix >::CreateDerivedTransformParameterMap ( ) const

inlineprivatevirtual

Reimplemented in elastix::OpenCLResampler< TElastix >.

Definition at line 205 of file elxResamplerBase.h.

CreateItkResultImage()

template<class TElastix >

virtual void elastix::ResamplerBase< TElastix >::CreateItkResultImage ( )

virtual

Function to create the result image in the format of an itk::Image.

CreateTransformParameterMap()

template<class TElastix >

void elastix::ResamplerBase< TElastix >::CreateTransformParameterMap

(

ParameterMapType &

parameterMap

)

const

Function to create transform-parameters map.

elxDeclarePureVirtualGetSelfMacro()

template<class TElastix >

elastix::ResamplerBase< TElastix >::elxDeclarePureVirtualGetSelfMacro ( ITKBaseType )

private

GetAsITKBaseType() [1/2]

template<class TElastix >

ITKBaseType * elastix::ResamplerBase< TElastix >::GetAsITKBaseType ( )

inline

Retrieves this object as ITKBaseType.

Definition at line 121 of file elxResamplerBase.h.

GetAsITKBaseType() [2/2]

template<class TElastix >

const ITKBaseType * elastix::ResamplerBase< TElastix >::GetAsITKBaseType ( ) const

inline

Retrieves this object as ITKBaseType, to use in const functions.

Definition at line 129 of file elxResamplerBase.h.

GetClassName()

template<class TElastix >

virtual const char * elastix::ResamplerBase< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented in elastix::DefaultResampler< TElastix >, and elastix::OpenCLResampler< TElastix >.

ITK_DISALLOW_COPY_AND_MOVE()

template<class TElastix >

elastix::ResamplerBase< TElastix >::ITK_DISALLOW_COPY_AND_MOVE

(

ResamplerBase< TElastix >

)

itkStaticConstMacro()

template<class TElastix >

elastix::ResamplerBase< TElastix >::itkStaticConstMacro	(	ImageDimension	,
		unsigned int	,
		OutputImageType::ImageDimension	)

Get the ImageDimension.

ReadFromFile()

template<class TElastix >

virtual void elastix::ResamplerBase< TElastix >::ReadFromFile ( )

virtual

Function to read transform-parameters from a file.

Reimplemented in elastix::OpenCLResampler< TElastix >.

ReleaseMemory()

template<class TElastix >

void elastix::ResamplerBase< TElastix >::ReleaseMemory ( )

private

Release memory.

ResampleAndWriteResultImage()

template<class TElastix >

void elastix::ResamplerBase< TElastix >::ResampleAndWriteResultImage	(	const std::string &	filename,
		const bool	showProgress )

Function to perform resample and write the result output image to a file.

SetComponents()

template<class TElastix >

virtual void elastix::ResamplerBase< TElastix >::SetComponents ( )

protectedvirtual

Method that sets the transform, the interpolator and the inputImage.

WriteResultImage()

template<class TElastix >

void elastix::ResamplerBase< TElastix >::WriteResultImage ( OutputImageType * imageimage, const std::string & filename, const bool showProgress )

private

Function to write the result output image to a file.

WriteToFile()

template<class TElastix >

void elastix::ResamplerBase< TElastix >::WriteToFile

(

std::ostream &

transformationParameterInfo

)

const

Function to write transform-parameters to a file.