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itk::ElastixRegistrationMethod< TFixedImage, TMovingImage > Class Template Reference

#include <itkElastixRegistrationMethod.h>

Detailed Description

template<typename TFixedImage, typename TMovingImage>
class itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >

Definition at line 59 of file itkElastixRegistrationMethod.h.

Inheritance diagram for itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >:
Inheritance graph
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Public Types

using ArgumentMapEntryType = ArgumentMapType::value_type
 
using ArgumentMapType = ElastixMainType::ArgumentMapType
 
using ConstPointer = SmartPointer<const Self>
 
using DataObjectContainerIterator = DataObjectContainerType::Iterator
 
using DataObjectContainerPointer = ElastixMainType::DataObjectContainerPointer
 
using DataObjectContainerType = ElastixMainType::DataObjectContainerType
 
using DataObjectIdentifierType = ProcessObject::DataObjectIdentifierType
 
using DataObjectPointerArraySizeType = ProcessObject::DataObjectPointerArraySizeType
 
using ElastixMainObjectPointer = ElastixMainType::ObjectPointer
 
using ElastixMainPointer = ElastixMainType::Pointer
 
using ElastixMainType = elx::ElastixMain
 
using ElastixMainVectorType = std::vector<ElastixMainPointer>
 
using FixedImageType = TFixedImage
 
using FixedMaskType = Image<unsigned char, FixedImageDimension>
 
using FlatDirectionCosinesType = ElastixMainType::FlatDirectionCosinesType
 
using MovingImageType = TMovingImage
 
using MovingMaskType = Image<unsigned char, MovingImageDimension>
 
using NameArrayType = ProcessObject::NameArray
 
using ParameterMapType = ParameterObjectType::ParameterMapType
 
using ParameterMapVectorType = ParameterObjectType::ParameterMapVectorType
 
using ParameterObjectConstPointer = ParameterObjectType::ConstPointer
 
using ParameterObjectPointer = ParameterObjectType::Pointer
 
using ParameterObjectType = elx::ParameterObject
 
using ParameterValueVectorType = ParameterObjectType::ParameterValueVectorType
 
using Pointer = SmartPointer<Self>
 
using ResultImageType = FixedImageType
 
using Self = ElastixRegistrationMethod
 
using Superclass = ImageSource<TFixedImage>
 
using TransformType = Transform<double, FixedImageDimension, MovingImageDimension>
 

Public Member Functions

virtual void AddFixedImage (TFixedImage *fixedImage)
 
virtual void AddFixedMask (FixedMaskType *fixedMask)
 
virtual void AddMovingImage (TMovingImage *movingImage)
 
virtual void AddMovingMask (MovingMaskType *movingMask)
 
void DisableOutput ()
 
virtual const char * GetClassName () const
 
TransformType * GetCombinationTransform () const
 
TransformType * GetExternalInitialTransform () const
 
const FixedImageType * GetFixedImage () const
 
const FixedImageType * GetFixedImage (const unsigned int index) const
 
const FixedMaskType * GetFixedMask () const
 
const FixedMaskType * GetFixedMask (const unsigned int index) const
 
virtual std::string GetFixedPointSetFileName () const
 
const TransformType * GetInitialTransform () const
 
virtual std::string GetInitialTransformParameterFileName () const
 
const FixedImageType * GetInput () const
 
const DataObject * GetInput (DataObjectPointerArraySizeType index) const
 
virtual std::string GetLogFileName () const
 
virtual ElastixLogLevel GetLogLevel () const
 
virtual const bool & GetLogToConsole ()
 
virtual const bool & GetLogToFile ()
 
const MovingImageType * GetMovingImage () const
 
const MovingImageType * GetMovingImage (const unsigned int index) const
 
const MovingMaskType * GetMovingMask () const
 
const MovingMaskType * GetMovingMask (const unsigned int index) const
 
virtual std::string GetMovingPointSetFileName () const
 
TransformType * GetNthTransform (const unsigned int n) const
 
unsigned int GetNumberOfFixedImages () const
 
unsigned int GetNumberOfFixedMasks () const
 
unsigned int GetNumberOfMovingImages () const
 
unsigned int GetNumberOfMovingMasks () const
 
virtual int GetNumberOfThreads () const
 
unsigned int GetNumberOfTransforms () const
 
ResultImageType * GetOutput ()
 
const ResultImageType * GetOutput () const
 
DataObject * GetOutput (unsigned int idx)
 
const DataObject * GetOutput (unsigned int idx) const
 
virtual std::string GetOutputDirectory () const
 
ParameterObjectType * GetParameterObject ()
 
const ParameterObjectType * GetParameterObject () const
 
ParameterObjectType * GetTransformParameterObject ()
 
const ParameterObjectType * GetTransformParameterObject () const
 
 ITK_DISALLOW_COPY_AND_MOVE (ElastixRegistrationMethod)
 
virtual void LogToConsoleOff ()
 
virtual void LogToConsoleOn ()
 
virtual void LogToFileOff ()
 
virtual void LogToFileOn ()
 
void RemoveFixedMask ()
 
void RemoveFixedPointSetFileName ()
 
virtual void RemoveInitialTransformParameterFileName ()
 
void RemoveLogFileName ()
 
virtual void RemoveMovingMask ()
 
void RemoveMovingPointSetFileName ()
 
void RemoveOutputDirectory ()
 
void SetExternalInitialTransform (TransformType *)
 
virtual void SetFixedImage (TFixedImage *fixedImage)
 
virtual void SetFixedMask (FixedMaskType *fixedMask)
 
virtual void SetFixedPointSetFileName (std::string _arg)
 
void SetInitialTransform (const TransformType *)
 
void SetInitialTransformParameterFileName (std::string)
 
void SetInitialTransformParameterObject (const elx::ParameterObject *)
 
void SetInput (DataObjectPointerArraySizeType index, DataObject *input)
 
void SetInput (FixedImageType *fixedImage)
 
void SetLogFileName (const std::string logFileName)
 
virtual void SetLogLevel (ElastixLogLevel _arg)
 
virtual void SetLogToConsole (bool _arg)
 
virtual void SetLogToFile (bool _arg)
 
virtual void SetMovingImage (TMovingImage *movingImages)
 
virtual void SetMovingMask (MovingMaskType *movingMask)
 
virtual void SetMovingPointSetFileName (std::string _arg)
 
virtual void SetNumberOfThreads (int _arg)
 
virtual void SetOutputDirectory (std::string _arg)
 
virtual void SetParameterObject (ParameterObjectType *parameterObject)
 

Static Public Member Functions

static SmartPointer< TransformType > ConvertToItkTransform (const TransformType &)
 
static Pointer New ()
 

Static Public Attributes

static constexpr unsigned int FixedImageDimension = TFixedImage::ImageDimension
 
static constexpr unsigned int MovingImageDimension = TMovingImage::ImageDimension
 

Protected Types

using DataObjectPointer = ProcessObject::DataObjectPointer
 

Protected Member Functions

 ElastixRegistrationMethod ()
 
void GenerateData () override
 
DataObjectPointer MakeOutput (DataObjectPointerArraySizeType idx) override
 

Private Types

using AdvancedCombinationTransformType
 

Private Member Functions

AdvancedCombinationTransformType * GetAdvancedCombinationTransform () const
 
template<typename TImage >
std::vector< TImage * > GetInputImages (const char *const inputTypeString)
 
unsigned int GetNumberOfInputsOfType (const DataObjectIdentifierType &intputType) const
 
bool IsInputOfType (const DataObjectIdentifierType &InputOfType, const DataObjectIdentifierType &inputName) const
 
std::string MakeUniqueName (const DataObjectIdentifierType &key)
 
void RemoveInputsOfType (const DataObjectIdentifierType &inputName)
 
void ResetInitialTransformAndModified ()
 
void ResetInitialTransformWithoutModified ()
 

Private Attributes

SmartPointer< const elx::ElastixMain > m_ElastixMain {}
 
bool m_EnableOutput { true }
 
SmartPointer< TransformType > m_ExternalInitialTransform {}
 
std::string m_FixedPointSetFileName {}
 
SmartPointer< const TransformType > m_InitialTransform {}
 
std::string m_InitialTransformParameterFileName {}
 
SmartPointer< const elx::ParameterObject > m_InitialTransformParameterObject {}
 
unsigned int m_InputUID { 0 }
 
std::string m_LogFileName {}
 
ElastixLogLevel m_LogLevel {}
 
bool m_LogToConsole { false }
 
bool m_LogToFile { false }
 
std::string m_MovingPointSetFileName {}
 
int m_NumberOfThreads { 0 }
 
std::string m_OutputDirectory {}
 

Member Typedef Documentation

◆ AdvancedCombinationTransformType

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::AdvancedCombinationTransformType
private
Initial value:
AdvancedCombinationTransform<elx::ElastixBase::CoordRepType, FixedImageDimension>

Definition at line 378 of file itkElastixRegistrationMethod.h.

◆ ArgumentMapEntryType

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::ArgumentMapEntryType = ArgumentMapType::value_type

Definition at line 82 of file itkElastixRegistrationMethod.h.

◆ ArgumentMapType

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::ArgumentMapType = ElastixMainType::ArgumentMapType

Definition at line 81 of file itkElastixRegistrationMethod.h.

◆ ConstPointer

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::ConstPointer = SmartPointer<const Self>

Definition at line 68 of file itkElastixRegistrationMethod.h.

◆ DataObjectContainerIterator

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::DataObjectContainerIterator = DataObjectContainerType::Iterator

Definition at line 87 of file itkElastixRegistrationMethod.h.

◆ DataObjectContainerPointer

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::DataObjectContainerPointer = ElastixMainType::DataObjectContainerPointer

Definition at line 86 of file itkElastixRegistrationMethod.h.

◆ DataObjectContainerType

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::DataObjectContainerType = ElastixMainType::DataObjectContainerType

Definition at line 85 of file itkElastixRegistrationMethod.h.

◆ DataObjectIdentifierType

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::DataObjectIdentifierType = ProcessObject::DataObjectIdentifierType

Definition at line 88 of file itkElastixRegistrationMethod.h.

◆ DataObjectPointer

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::DataObjectPointer = ProcessObject::DataObjectPointer
protected

Definition at line 316 of file itkElastixRegistrationMethod.h.

◆ DataObjectPointerArraySizeType

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::DataObjectPointerArraySizeType = ProcessObject::DataObjectPointerArraySizeType

Definition at line 89 of file itkElastixRegistrationMethod.h.

◆ ElastixMainObjectPointer

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::ElastixMainObjectPointer = ElastixMainType::ObjectPointer

Definition at line 80 of file itkElastixRegistrationMethod.h.

◆ ElastixMainPointer

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::ElastixMainPointer = ElastixMainType::Pointer

Definition at line 78 of file itkElastixRegistrationMethod.h.

◆ ElastixMainType

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::ElastixMainType = elx::ElastixMain

Typedefs.

Definition at line 77 of file itkElastixRegistrationMethod.h.

◆ ElastixMainVectorType

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::ElastixMainVectorType = std::vector<ElastixMainPointer>

Definition at line 79 of file itkElastixRegistrationMethod.h.

◆ FixedImageType

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::FixedImageType = TFixedImage

Definition at line 106 of file itkElastixRegistrationMethod.h.

◆ FixedMaskType

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::FixedMaskType = Image<unsigned char, FixedImageDimension>

Definition at line 102 of file itkElastixRegistrationMethod.h.

◆ FlatDirectionCosinesType

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::FlatDirectionCosinesType = ElastixMainType::FlatDirectionCosinesType

Definition at line 83 of file itkElastixRegistrationMethod.h.

◆ MovingImageType

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::MovingImageType = TMovingImage

Definition at line 107 of file itkElastixRegistrationMethod.h.

◆ MovingMaskType

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::MovingMaskType = Image<unsigned char, MovingImageDimension>

Definition at line 103 of file itkElastixRegistrationMethod.h.

◆ NameArrayType

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::NameArrayType = ProcessObject::NameArray

Definition at line 90 of file itkElastixRegistrationMethod.h.

◆ ParameterMapType

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::ParameterMapType = ParameterObjectType::ParameterMapType

Definition at line 93 of file itkElastixRegistrationMethod.h.

◆ ParameterMapVectorType

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::ParameterMapVectorType = ParameterObjectType::ParameterMapVectorType

Definition at line 94 of file itkElastixRegistrationMethod.h.

◆ ParameterObjectConstPointer

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::ParameterObjectConstPointer = ParameterObjectType::ConstPointer

Definition at line 97 of file itkElastixRegistrationMethod.h.

◆ ParameterObjectPointer

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::ParameterObjectPointer = ParameterObjectType::Pointer

Definition at line 96 of file itkElastixRegistrationMethod.h.

◆ ParameterObjectType

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::ParameterObjectType = elx::ParameterObject

Definition at line 92 of file itkElastixRegistrationMethod.h.

◆ ParameterValueVectorType

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::ParameterValueVectorType = ParameterObjectType::ParameterValueVectorType

Definition at line 95 of file itkElastixRegistrationMethod.h.

◆ Pointer

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::Pointer = SmartPointer<Self>

Definition at line 67 of file itkElastixRegistrationMethod.h.

◆ ResultImageType

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::ResultImageType = FixedImageType

Definition at line 108 of file itkElastixRegistrationMethod.h.

◆ Self

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::Self = ElastixRegistrationMethod

Standard ITK typedefs.

Definition at line 65 of file itkElastixRegistrationMethod.h.

◆ Superclass

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::Superclass = ImageSource<TFixedImage>

Definition at line 66 of file itkElastixRegistrationMethod.h.

◆ TransformType

template<typename TFixedImage , typename TMovingImage >
using itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::TransformType = Transform<double, FixedImageDimension, MovingImageDimension>

Definition at line 104 of file itkElastixRegistrationMethod.h.

Constructor & Destructor Documentation

◆ ElastixRegistrationMethod()

template<typename TFixedImage , typename TMovingImage >
itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::ElastixRegistrationMethod ( )
protected

Member Function Documentation

◆ AddFixedImage()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::AddFixedImage ( TFixedImage * fixedImage)
virtual

◆ AddFixedMask()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::AddFixedMask ( FixedMaskType * fixedMask)
virtual

Set/Add/Get/Remove/NumberOf fixed masks.

◆ AddMovingImage()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::AddMovingImage ( TMovingImage * movingImage)
virtual

◆ AddMovingMask()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::AddMovingMask ( MovingMaskType * movingMask)
virtual

◆ ConvertToItkTransform()

template<typename TFixedImage , typename TMovingImage >
static SmartPointer< TransformType > itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::ConvertToItkTransform ( const TransformType & )
static

Converts the specified elastix Transform object to the corresponding ITK Transform object. Returns null if there is no corresponding ITK Transform type.

◆ DisableOutput()

template<typename TFixedImage , typename TMovingImage >
void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::DisableOutput ( )
inline

Disables output to log and standard output.

Definition at line 282 of file itkElastixRegistrationMethod.h.

◆ GenerateData()

template<typename TFixedImage , typename TMovingImage >
void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GenerateData ( )
overrideprotected

◆ GetAdvancedCombinationTransform()

template<typename TFixedImage , typename TMovingImage >
AdvancedCombinationTransformType * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetAdvancedCombinationTransform ( ) const
private

◆ GetClassName()

template<typename TFixedImage , typename TMovingImage >
virtual const char * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

◆ GetCombinationTransform()

template<typename TFixedImage , typename TMovingImage >
TransformType * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetCombinationTransform ( ) const

Returns the combination transformation, produced during the last Update().

◆ GetExternalInitialTransform()

template<typename TFixedImage , typename TMovingImage >
TransformType * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetExternalInitialTransform ( ) const
inline

Returns the previously specified external ITK Transform. Note that it allows full access to the transform, even when having const-only access to this ElastixRegistrationMethod, because the transform is external to the ElastixRegistrationMethod object.

Definition at line 226 of file itkElastixRegistrationMethod.h.

◆ GetFixedImage() [1/2]

template<typename TFixedImage , typename TMovingImage >
const FixedImageType * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetFixedImage ( ) const

◆ GetFixedImage() [2/2]

template<typename TFixedImage , typename TMovingImage >
const FixedImageType * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetFixedImage ( const unsigned int index) const

◆ GetFixedMask() [1/2]

template<typename TFixedImage , typename TMovingImage >
const FixedMaskType * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetFixedMask ( ) const

◆ GetFixedMask() [2/2]

template<typename TFixedImage , typename TMovingImage >
const FixedMaskType * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetFixedMask ( const unsigned int index) const

◆ GetFixedPointSetFileName()

template<typename TFixedImage , typename TMovingImage >
virtual std::string itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetFixedPointSetFileName ( ) const
virtual

◆ GetInitialTransform()

template<typename TFixedImage , typename TMovingImage >
const TransformType * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetInitialTransform ( ) const
inline

Returns the previously specified initial ITK Transform. Only allows const access to the transform.

Definition at line 213 of file itkElastixRegistrationMethod.h.

◆ GetInitialTransformParameterFileName()

template<typename TFixedImage , typename TMovingImage >
virtual std::string itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetInitialTransformParameterFileName ( ) const
virtual

◆ GetInput() [1/2]

template<typename TFixedImage , typename TMovingImage >
const FixedImageType * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetInput ( ) const

◆ GetInput() [2/2]

template<typename TFixedImage , typename TMovingImage >
const DataObject * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetInput ( DataObjectPointerArraySizeType index) const

◆ GetInputImages()

template<typename TFixedImage , typename TMovingImage >
template<typename TImage >
std::vector< TImage * > itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetInputImages ( const char *const inputTypeString)
inlineprivate

Retrieves either the fixed or the moving input images.

Definition at line 342 of file itkElastixRegistrationMethod.h.

◆ GetLogFileName()

template<typename TFixedImage , typename TMovingImage >
virtual std::string itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetLogFileName ( ) const
virtual

◆ GetLogLevel()

template<typename TFixedImage , typename TMovingImage >
virtual ElastixLogLevel itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetLogLevel ( ) const
virtual

◆ GetLogToConsole()

template<typename TFixedImage , typename TMovingImage >
virtual const bool & itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetLogToConsole ( )
virtual

◆ GetLogToFile()

template<typename TFixedImage , typename TMovingImage >
virtual const bool & itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetLogToFile ( )
virtual

◆ GetMovingImage() [1/2]

template<typename TFixedImage , typename TMovingImage >
const MovingImageType * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetMovingImage ( ) const

◆ GetMovingImage() [2/2]

template<typename TFixedImage , typename TMovingImage >
const MovingImageType * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetMovingImage ( const unsigned int index) const

◆ GetMovingMask() [1/2]

template<typename TFixedImage , typename TMovingImage >
const MovingMaskType * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetMovingMask ( ) const

◆ GetMovingMask() [2/2]

template<typename TFixedImage , typename TMovingImage >
const MovingMaskType * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetMovingMask ( const unsigned int index) const

◆ GetMovingPointSetFileName()

template<typename TFixedImage , typename TMovingImage >
virtual std::string itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetMovingPointSetFileName ( ) const
virtual

◆ GetNthTransform()

template<typename TFixedImage , typename TMovingImage >
TransformType * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetNthTransform ( const unsigned int n) const

Returns the nth transformation, produced during the last Update().

◆ GetNumberOfFixedImages()

template<typename TFixedImage , typename TMovingImage >
unsigned int itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetNumberOfFixedImages ( ) const

◆ GetNumberOfFixedMasks()

template<typename TFixedImage , typename TMovingImage >
unsigned int itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetNumberOfFixedMasks ( ) const

◆ GetNumberOfInputsOfType()

template<typename TFixedImage , typename TMovingImage >
unsigned int itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetNumberOfInputsOfType ( const DataObjectIdentifierType & intputType) const
private

GetNumberOfInputsOfType

◆ GetNumberOfMovingImages()

template<typename TFixedImage , typename TMovingImage >
unsigned int itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetNumberOfMovingImages ( ) const

◆ GetNumberOfMovingMasks()

template<typename TFixedImage , typename TMovingImage >
unsigned int itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetNumberOfMovingMasks ( ) const

◆ GetNumberOfThreads()

template<typename TFixedImage , typename TMovingImage >
virtual int itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetNumberOfThreads ( ) const
virtual

◆ GetNumberOfTransforms()

template<typename TFixedImage , typename TMovingImage >
unsigned int itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetNumberOfTransforms ( ) const

Returns the number of transformations, produced during the last Update().

◆ GetOutput() [1/4]

template<typename TFixedImage , typename TMovingImage >
ResultImageType * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetOutput ( )

◆ GetOutput() [2/4]

template<typename TFixedImage , typename TMovingImage >
const ResultImageType * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetOutput ( ) const

◆ GetOutput() [3/4]

template<typename TFixedImage , typename TMovingImage >
DataObject * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetOutput ( unsigned int idx)

◆ GetOutput() [4/4]

template<typename TFixedImage , typename TMovingImage >
const DataObject * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetOutput ( unsigned int idx) const

◆ GetOutputDirectory()

template<typename TFixedImage , typename TMovingImage >
virtual std::string itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetOutputDirectory ( ) const
virtual

◆ GetParameterObject() [1/2]

template<typename TFixedImage , typename TMovingImage >
ParameterObjectType * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetParameterObject ( )

◆ GetParameterObject() [2/2]

template<typename TFixedImage , typename TMovingImage >
const ParameterObjectType * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetParameterObject ( ) const

◆ GetTransformParameterObject() [1/2]

template<typename TFixedImage , typename TMovingImage >
ParameterObjectType * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetTransformParameterObject ( )

Get transform parameter object.

◆ GetTransformParameterObject() [2/2]

template<typename TFixedImage , typename TMovingImage >
const ParameterObjectType * itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::GetTransformParameterObject ( ) const

◆ IsInputOfType()

template<typename TFixedImage , typename TMovingImage >
bool itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::IsInputOfType ( const DataObjectIdentifierType & InputOfType,
const DataObjectIdentifierType & inputName ) const
private

IsInputOfType.

◆ ITK_DISALLOW_COPY_AND_MOVE()

template<typename TFixedImage , typename TMovingImage >
itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::ITK_DISALLOW_COPY_AND_MOVE ( ElastixRegistrationMethod< TFixedImage, TMovingImage > )

◆ LogToConsoleOff()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::LogToConsoleOff ( )
virtual

◆ LogToConsoleOn()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::LogToConsoleOn ( )
virtual

◆ LogToFileOff()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::LogToFileOff ( )
virtual

◆ LogToFileOn()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::LogToFileOn ( )
virtual

◆ MakeOutput()

template<typename TFixedImage , typename TMovingImage >
DataObjectPointer itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::MakeOutput ( DataObjectPointerArraySizeType idx)
overrideprotected

◆ MakeUniqueName()

template<typename TFixedImage , typename TMovingImage >
std::string itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::MakeUniqueName ( const DataObjectIdentifierType & key)
private

MakeUniqueName.

◆ New()

template<typename TFixedImage , typename TMovingImage >
static Pointer itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::New ( )
static

Method for creation through the object factory.

◆ RemoveFixedMask()

template<typename TFixedImage , typename TMovingImage >
void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::RemoveFixedMask ( )

◆ RemoveFixedPointSetFileName()

template<typename TFixedImage , typename TMovingImage >
void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::RemoveFixedPointSetFileName ( )
inline

Definition at line 239 of file itkElastixRegistrationMethod.h.

◆ RemoveInitialTransformParameterFileName()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::RemoveInitialTransformParameterFileName ( )
inlinevirtual

Definition at line 202 of file itkElastixRegistrationMethod.h.

◆ RemoveInputsOfType()

template<typename TFixedImage , typename TMovingImage >
void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::RemoveInputsOfType ( const DataObjectIdentifierType & inputName)
private

RemoveInputsOfType.

◆ RemoveLogFileName()

template<typename TFixedImage , typename TMovingImage >
void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::RemoveLogFileName ( )

◆ RemoveMovingMask()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::RemoveMovingMask ( )
virtual

◆ RemoveMovingPointSetFileName()

template<typename TFixedImage , typename TMovingImage >
void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::RemoveMovingPointSetFileName ( )
inline

Definition at line 248 of file itkElastixRegistrationMethod.h.

◆ RemoveOutputDirectory()

template<typename TFixedImage , typename TMovingImage >
void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::RemoveOutputDirectory ( )
inline

Definition at line 257 of file itkElastixRegistrationMethod.h.

◆ ResetInitialTransformAndModified()

template<typename TFixedImage , typename TMovingImage >
void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::ResetInitialTransformAndModified ( )
inlineprivate

Definition at line 365 of file itkElastixRegistrationMethod.h.

◆ ResetInitialTransformWithoutModified()

template<typename TFixedImage , typename TMovingImage >
void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::ResetInitialTransformWithoutModified ( )
inlineprivate

Definition at line 356 of file itkElastixRegistrationMethod.h.

◆ SetExternalInitialTransform()

template<typename TFixedImage , typename TMovingImage >
void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::SetExternalInitialTransform ( TransformType * )

Set the initial transformation by means of an external ITK Transform.

◆ SetFixedImage()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::SetFixedImage ( TFixedImage * fixedImage)
virtual

Set/Add/Get/NumberOf fixed images.

◆ SetFixedMask()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::SetFixedMask ( FixedMaskType * fixedMask)
virtual

◆ SetFixedPointSetFileName()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::SetFixedPointSetFileName ( std::string _arg)
virtual

Set/Get/Remove fixed point set filename.

◆ SetInitialTransform()

template<typename TFixedImage , typename TMovingImage >
void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::SetInitialTransform ( const TransformType * )

Set the initial transformation by means of an ITK Transform.

◆ SetInitialTransformParameterFileName()

template<typename TFixedImage , typename TMovingImage >
void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::SetInitialTransformParameterFileName ( std::string )

Set/Get/Remove initial transform parameter filename.

◆ SetInitialTransformParameterObject()

template<typename TFixedImage , typename TMovingImage >
void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::SetInitialTransformParameterObject ( const elx::ParameterObject * )

Set initial transform parameter object.

◆ SetInput() [1/2]

template<typename TFixedImage , typename TMovingImage >
void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::SetInput ( DataObjectPointerArraySizeType index,
DataObject * input )

◆ SetInput() [2/2]

template<typename TFixedImage , typename TMovingImage >
void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::SetInput ( FixedImageType * fixedImage)

◆ SetLogFileName()

template<typename TFixedImage , typename TMovingImage >
void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::SetLogFileName ( const std::string logFileName)

Set/Get/Remove log filename.

◆ SetLogLevel()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::SetLogLevel ( ElastixLogLevel _arg)
virtual

◆ SetLogToConsole()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::SetLogToConsole ( bool _arg)
virtual

Log to std::cout on/off.

◆ SetLogToFile()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::SetLogToFile ( bool _arg)
virtual

Log to file on/off.

◆ SetMovingImage()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::SetMovingImage ( TMovingImage * movingImages)
virtual

Set/Add/Get/NumberOf moving images.

◆ SetMovingMask()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::SetMovingMask ( MovingMaskType * movingMask)
virtual

Set/Add/Get/Remove/NumberOf moving masks.

◆ SetMovingPointSetFileName()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::SetMovingPointSetFileName ( std::string _arg)
virtual

Set/Get/Remove moving point set filename.

◆ SetNumberOfThreads()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::SetNumberOfThreads ( int _arg)
virtual

◆ SetOutputDirectory()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::SetOutputDirectory ( std::string _arg)
virtual

Set/Get/Remove output directory.

◆ SetParameterObject()

template<typename TFixedImage , typename TMovingImage >
virtual void itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::SetParameterObject ( ParameterObjectType * parameterObject)
virtual

Set/Get parameter object.

Field Documentation

◆ FixedImageDimension

template<typename TFixedImage , typename TMovingImage >
unsigned int itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::FixedImageDimension = TFixedImage::ImageDimension
staticconstexpr

Definition at line 99 of file itkElastixRegistrationMethod.h.

◆ m_ElastixMain

template<typename TFixedImage , typename TMovingImage >
SmartPointer<const elx::ElastixMain> itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::m_ElastixMain {}
private

Definition at line 384 of file itkElastixRegistrationMethod.h.

◆ m_EnableOutput

template<typename TFixedImage , typename TMovingImage >
bool itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::m_EnableOutput { true }
private

Definition at line 397 of file itkElastixRegistrationMethod.h.

◆ m_ExternalInitialTransform

template<typename TFixedImage , typename TMovingImage >
SmartPointer<TransformType> itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::m_ExternalInitialTransform {}
private

Definition at line 389 of file itkElastixRegistrationMethod.h.

◆ m_FixedPointSetFileName

template<typename TFixedImage , typename TMovingImage >
std::string itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::m_FixedPointSetFileName {}
private

Definition at line 391 of file itkElastixRegistrationMethod.h.

◆ m_InitialTransform

template<typename TFixedImage , typename TMovingImage >
SmartPointer<const TransformType> itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::m_InitialTransform {}
private

Definition at line 388 of file itkElastixRegistrationMethod.h.

◆ m_InitialTransformParameterFileName

template<typename TFixedImage , typename TMovingImage >
std::string itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::m_InitialTransformParameterFileName {}
private

Definition at line 386 of file itkElastixRegistrationMethod.h.

◆ m_InitialTransformParameterObject

template<typename TFixedImage , typename TMovingImage >
SmartPointer<const elx::ParameterObject> itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::m_InitialTransformParameterObject {}
private

Definition at line 387 of file itkElastixRegistrationMethod.h.

◆ m_InputUID

template<typename TFixedImage , typename TMovingImage >
unsigned int itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::m_InputUID { 0 }
private

Definition at line 405 of file itkElastixRegistrationMethod.h.

◆ m_LogFileName

template<typename TFixedImage , typename TMovingImage >
std::string itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::m_LogFileName {}
private

Definition at line 395 of file itkElastixRegistrationMethod.h.

◆ m_LogLevel

template<typename TFixedImage , typename TMovingImage >
ElastixLogLevel itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::m_LogLevel {}
private

Definition at line 401 of file itkElastixRegistrationMethod.h.

◆ m_LogToConsole

template<typename TFixedImage , typename TMovingImage >
bool itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::m_LogToConsole { false }
private

Definition at line 398 of file itkElastixRegistrationMethod.h.

◆ m_LogToFile

template<typename TFixedImage , typename TMovingImage >
bool itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::m_LogToFile { false }
private

Definition at line 399 of file itkElastixRegistrationMethod.h.

◆ m_MovingPointSetFileName

template<typename TFixedImage , typename TMovingImage >
std::string itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::m_MovingPointSetFileName {}
private

Definition at line 392 of file itkElastixRegistrationMethod.h.

◆ m_NumberOfThreads

template<typename TFixedImage , typename TMovingImage >
int itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::m_NumberOfThreads { 0 }
private

Definition at line 403 of file itkElastixRegistrationMethod.h.

◆ m_OutputDirectory

template<typename TFixedImage , typename TMovingImage >
std::string itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::m_OutputDirectory {}
private

Definition at line 394 of file itkElastixRegistrationMethod.h.

◆ MovingImageDimension

template<typename TFixedImage , typename TMovingImage >
unsigned int itk::ElastixRegistrationMethod< TFixedImage, TMovingImage >::MovingImageDimension = TMovingImage::ImageDimension
staticconstexpr

Definition at line 100 of file itkElastixRegistrationMethod.h.


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