#include <itkMultiBSplineDeformableTransformWithNormal.h>

Detailed Description

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>
class itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >

This transform is a composition of B-spline transformations, allowing sliding motion between different labels.

Detailed explanation ...

Author: Vivien Delmon

Definition at line 42 of file itkMultiBSplineDeformableTransformWithNormal.h.

Inheritance diagram for itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >:

[legend]

Public Types
using	BaseType = Vector<VectorType, Self::SpaceDimension>
using	ConstPointer = SmartPointer<const Self>
using	ContinuousIndexType = ContinuousIndex<ScalarType, SpaceDimension>
using	DirectionType = typename ImageType::DirectionType
using	GridOffsetType = IndexType
using	ImageBasePointer = typename ImageBaseType::Pointer
using	ImageBaseType = Image<BaseType, Self::SpaceDimension>
using	ImageLabelInterpolator = itk::NearestNeighborInterpolateImageFunction<ImageLabelType, TScalarType>
using	ImageLabelInterpolatorPointer = typename ImageLabelInterpolator::Pointer
using	ImageLabelPointer = typename ImageLabelType::Pointer
using	ImageLabelType = Image<unsigned char, Self::SpaceDimension>
using	ImagePointer = typename ImageType::Pointer
using	ImageType = Image<PixelType, Self::SpaceDimension>
using	ImageVectorPointer = typename ImageVectorType::Pointer
using	ImageVectorType = Image<VectorType, Self::SpaceDimension>
using	IndexType = typename RegionType::IndexType
using	InternalMatrixType
using	JacobianOfSpatialHessianType
using	JacobianOfSpatialJacobianType
using	NonZeroJacobianIndicesType
using	OriginType = typename ImageType::PointType
using	ParameterIndexArrayType = Array<unsigned long>
using	Pointer = SmartPointer<Self>
using	RegionType = ImageRegion<Self::SpaceDimension>
using	Self = MultiBSplineDeformableTransformWithNormal
using	SizeType = typename RegionType::SizeType
using	SpacingType = typename ImageBase<NDimensions>::SpacingType
using	SpatialHessianType
using	SpatialJacobianType
using	Superclass = AdvancedTransform<TScalarType, NDimensions, NDimensions>
using	VectorType = Vector<TScalarType, Self::SpaceDimension>
Public Types inherited from itk::AdvancedTransform< double, 3, 3 >
using	ConstPointer
using	InternalMatrixType
using	InverseTransformBaseType
using	JacobianOfSpatialHessianType
using	JacobianOfSpatialJacobianType
using	MovingImageGradientType
using	MovingImageGradientValueType
using	NonZeroJacobianIndicesType
using	Pointer
using	Self
using	SpatialHessianType
using	SpatialJacobianType
using	Superclass
using	TransformType
using	TransformTypeConstPointer
using	TransformTypePointer

Public Member Functions
const ParametersType &	GetFixedParameters () const override
virtual DirectionType	GetGridDirection () const
virtual OriginType	GetGridOrigin () const
virtual RegionType	GetGridRegion () const
virtual SpacingType	GetGridSpacing () const
bool	GetHasNonZeroSpatialHessian () const override
virtual bool	GetHasNonZeroSpatialJacobian () const
void	GetJacobian (const InputPointType &inputPoint, JacobianType &j, NonZeroJacobianIndicesType &) const override
void	GetJacobianOfSpatialHessian (const InputPointType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const override
void	GetJacobianOfSpatialHessian (const InputPointType &, SpatialHessianType &, JacobianOfSpatialHessianType &, NonZeroJacobianIndicesType &) const override
void	GetJacobianOfSpatialJacobian (const InputPointType &, SpatialJacobianType &, JacobianOfSpatialJacobianType &, NonZeroJacobianIndicesType &) const override
void	GetJacobianOfSpatialJacobian (const InputPointType &inputPoint, JacobianOfSpatialJacobianType &jsj, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const override
virtual ImageLabelType *	GetLabels () const
virtual ImageBaseType *	GetLocalBases () const
virtual unsigned char	GetNbLabels () const
virtual unsigned int	GetNumberOfAffectedWeights () const
NumberOfParametersType	GetNumberOfNonZeroJacobianIndices () const override
NumberOfParametersType	GetNumberOfParameters () const override
virtual NumberOfParametersType	GetNumberOfParametersPerDimension () const
const ParametersType &	GetParameters () const override
void	GetSpatialHessian (const InputPointType &inputPoint, SpatialHessianType &sh) const override
void	GetSpatialJacobian (const InputPointType &inputPoint, SpatialJacobianType &sj) const override
virtual bool	HasNonZeroJacobianOfSpatialHessian () const
virtual bool	HasNonZeroJacobianOfSpatialJacobian () const
bool	IsLinear () const override
	ITK_DISALLOW_COPY_AND_MOVE (MultiBSplineDeformableTransformWithNormal)
	itkOverrideGetNameOfClassMacro (MultiBSplineDeformableTransformWithNormal)
	itkStaticConstMacro (SpaceDimension, unsigned int, NDimensions)
	itkStaticConstMacro (SplineOrder, unsigned int, VSplineOrder)
void	SetFixedParameters (const ParametersType &parameters) override
virtual void	SetGridDirection (const DirectionType &spacing)
virtual void	SetGridOrigin (const OriginType &origin)
virtual void	SetGridRegion (const RegionType &region)
virtual void	SetGridSpacing (const SpacingType &spacing)
void	SetIdentity ()
void	SetLabels (ImageLabelType *labels)
void	SetParameters (const ParametersType &parameters) override
void	SetParametersByValue (const ParametersType &parameters) override
OutputCovariantVectorType	TransformCovariantVector (const InputCovariantVectorType &) const override
OutputPointType	TransformPoint (const InputPointType &point) const override
OutputVectorType	TransformVector (const InputVectorType &) const override
OutputVnlVectorType	TransformVector (const InputVnlVectorType &) const override
void	UpdateLocalBases ()
Public Member Functions inherited from itk::AdvancedTransform< double, 3, 3 >
void	ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &) const override
virtual void	EvaluateJacobianWithImageGradientProduct (const InputPointType &inputPoint, const MovingImageGradientType &movingImageGradient, DerivativeType &imageJacobian, NonZeroJacobianIndicesType &nonZeroJacobianIndices) const
virtual bool	GetHasNonZeroJacobianOfSpatialHessian () const
	ITK_DISALLOW_COPY_AND_MOVE (AdvancedTransform)
	itkOverrideGetNameOfClassMacro (AdvancedTransform)
	itkStaticConstMacro (InputSpaceDimension, unsigned int, NInputDimensions)

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	MultiBSplineDeformableTransformWithNormal ()
void	PrintSelf (std::ostream &os, Indent indent) const override
	~MultiBSplineDeformableTransformWithNormal () override=default
Protected Member Functions inherited from itk::AdvancedTransform< double, 3, 3 >
	AdvancedTransform ()=default
	~AdvancedTransform () override=default

Private Types
using	TransformType = AdvancedBSplineDeformableTransform<TScalarType, Self::SpaceDimension, VSplineOrder>

Private Member Functions
void	DispatchParameters (const ParametersType &parameters)
void	PointToLabel (const InputPointType &p, int &l) const

Private Attributes
const ParametersType *	m_InputParametersPointer {}
ParametersType	m_InternalParametersBuffer {}
ImageLabelPointer	m_Labels {}
ImageLabelInterpolatorPointer	m_LabelsInterpolator {}
ImageVectorPointer	m_LabelsNormals {}
int	m_LastJacobian {}
ImageBasePointer	m_LocalBases {}
unsigned char	m_NbLabels {}
std::vector< ParametersType >	m_Para {}
std::vector< typename TransformType::Pointer >	m_Trans {}

Static Private Attributes
static constexpr unsigned	NumberOfWeights = TransformType::NumberOfWeights

Additional Inherited Members
Protected Attributes inherited from itk::AdvancedTransform< double, 3, 3 >
bool	m_HasNonZeroJacobianOfSpatialHessian
bool	m_HasNonZeroSpatialHessian

Member Typedef Documentation

◆ BaseType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::BaseType = Vector<VectorType, Self::SpaceDimension>

Definition at line 235 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ ConstPointer

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::ConstPointer = SmartPointer<const Self>

Definition at line 52 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ ContinuousIndexType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::ContinuousIndexType = ContinuousIndex<ScalarType, SpaceDimension>

This typedef should be equal to the typedef used in derived classes based on the weightsfunction.

Definition at line 355 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ DirectionType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::DirectionType = typename ImageType::DirectionType

Definition at line 194 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ GridOffsetType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GridOffsetType = IndexType

Definition at line 196 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ ImageBasePointer

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::ImageBasePointer = typename ImageBaseType::Pointer

Definition at line 239 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ ImageBaseType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::ImageBaseType = Image<BaseType, Self::SpaceDimension>

Definition at line 238 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ ImageLabelInterpolator

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::ImageLabelInterpolator = itk::NearestNeighborInterpolateImageFunction<ImageLabelType, TScalarType>

Definition at line 230 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ ImageLabelInterpolatorPointer

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::ImageLabelInterpolatorPointer = typename ImageLabelInterpolator::Pointer

Definition at line 231 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ ImageLabelPointer

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::ImageLabelPointer = typename ImageLabelType::Pointer

Definition at line 228 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ ImageLabelType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::ImageLabelType = Image<unsigned char, Self::SpaceDimension>

Typedef of the label image.

Definition at line 227 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ ImagePointer

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::ImagePointer = typename ImageType::Pointer

Definition at line 167 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ ImageType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::ImageType = Image<PixelType, Self::SpaceDimension>

Definition at line 166 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ ImageVectorPointer

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::ImageVectorPointer = typename ImageVectorType::Pointer

Definition at line 237 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ ImageVectorType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::ImageVectorType = Image<VectorType, Self::SpaceDimension>

Definition at line 236 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ IndexType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::IndexType = typename RegionType::IndexType

Definition at line 191 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ InternalMatrixType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::AdvancedTransform< TScalarType, NInputDimensions, NOutputDimensions >::InternalMatrixType

Definition at line 140 of file itkAdvancedTransform.h.

◆ JacobianOfSpatialHessianType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::AdvancedTransform< TScalarType, NInputDimensions, NOutputDimensions >::JacobianOfSpatialHessianType

Definition at line 139 of file itkAdvancedTransform.h.

◆ JacobianOfSpatialJacobianType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::AdvancedTransform< TScalarType, NInputDimensions, NOutputDimensions >::JacobianOfSpatialJacobianType

Definition at line 135 of file itkAdvancedTransform.h.

◆ NonZeroJacobianIndicesType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::AdvancedTransform< TScalarType, NInputDimensions, NOutputDimensions >::NonZeroJacobianIndicesType

Types for the (Spatial)Jacobian/Hessian. Using an itk::FixedArray instead of an std::vector gives a performance gain for the SpatialHessianType.

Definition at line 133 of file itkAdvancedTransform.h.

◆ OriginType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::OriginType = typename ImageType::PointType

Definition at line 195 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ ParameterIndexArrayType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::ParameterIndexArrayType = Array<unsigned long>

Parameter index array type.

Definition at line 256 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ Pointer

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::Pointer = SmartPointer<Self>

Definition at line 51 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ RegionType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::RegionType = ImageRegion<Self::SpaceDimension>

Get the array of coefficient images. Set the array of coefficient images.

This is an alternative API for setting the BSpline coefficients as an array of SpaceDimension images. The grid region spacing and origin is taken from the first image. It is assume that the buffered region of all the subsequent images are the same as the first image. Note that no error checking is done.

Warning: use either the SetParameters() or SetCoefficientImages() API. Mixing the two modes may results in unexpected results. Typedefs for specifying the extend to the grid.

Definition at line 189 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ Self

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::Self = MultiBSplineDeformableTransformWithNormal

Standard class typedefs.

Definition at line 49 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ SizeType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::SizeType = typename RegionType::SizeType

Definition at line 192 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ SpacingType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::SpacingType = typename ImageBase<NDimensions>::SpacingType

Definition at line 193 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ SpatialHessianType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::AdvancedTransform< TScalarType, NInputDimensions, NOutputDimensions >::SpatialHessianType

Definition at line 137 of file itkAdvancedTransform.h.

◆ SpatialJacobianType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::AdvancedTransform< TScalarType, NInputDimensions, NOutputDimensions >::SpatialJacobianType

Definition at line 134 of file itkAdvancedTransform.h.

◆ Superclass

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::Superclass = AdvancedTransform<TScalarType, NDimensions, NDimensions>

Definition at line 50 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ TransformType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::TransformType = AdvancedBSplineDeformableTransform<TScalarType, Self::SpaceDimension, VSplineOrder>

private

Definition at line 473 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ VectorType

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

using itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::VectorType = Vector<TScalarType, Self::SpaceDimension>

Typedef of the Normal Grid.

Definition at line 234 of file itkMultiBSplineDeformableTransformWithNormal.h.

Constructor & Destructor Documentation

◆ MultiBSplineDeformableTransformWithNormal()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::MultiBSplineDeformableTransformWithNormal ( )

protected

◆ ~MultiBSplineDeformableTransformWithNormal()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::~MultiBSplineDeformableTransformWithNormal ( )

overrideprotecteddefault

Member Function Documentation

◆ DispatchParameters()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

void itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::DispatchParameters ( const ParametersType & parameters )

private

◆ GetFixedParameters()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

const ParametersType & itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetFixedParameters ( ) const

override

Get the Transformation Fixed Parameters.

◆ GetGridDirection()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

virtual DirectionType itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetGridDirection ( ) const

virtual

◆ GetGridOrigin()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

virtual OriginType itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetGridOrigin ( ) const

virtual

◆ GetGridRegion()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

virtual RegionType itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetGridRegion ( ) const

virtual

◆ GetGridSpacing()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

virtual SpacingType itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetGridSpacing ( ) const

virtual

◆ GetHasNonZeroSpatialHessian()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

bool itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetHasNonZeroSpatialHessian ( ) const

inlineoverridevirtual

Reimplemented from itk::AdvancedTransform< double, 3, 3 >.

Definition at line 341 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ GetHasNonZeroSpatialJacobian()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

virtual bool itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetHasNonZeroSpatialJacobian ( ) const

inlinevirtual

Whether the advanced transform has nonzero matrices.

Definition at line 327 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ GetJacobian()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

void itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetJacobian	(	const InputPointType &	inputPoint,
		JacobianType &	j,
		NonZeroJacobianIndicesType &	) const

overridevirtual

Compute the Jacobian matrix of the transformation at one point. Compute the Jacobian of the transformation.

Implements itk::AdvancedTransform< double, 3, 3 >.

◆ GetJacobianOfSpatialHessian() [1/2]

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

void itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetJacobianOfSpatialHessian	(	const InputPointType &	,
		JacobianOfSpatialHessianType &	,
		NonZeroJacobianIndicesType &	) const

inlineoverridevirtual

Implements itk::AdvancedTransform< double, 3, 3 >.

Definition at line 388 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ GetJacobianOfSpatialHessian() [2/2]

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

void itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetJacobianOfSpatialHessian	(	const InputPointType &	,
		SpatialHessianType &	,
		JacobianOfSpatialHessianType &	,
		NonZeroJacobianIndicesType &	) const

override

◆ GetJacobianOfSpatialJacobian() [1/2]

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

void itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetJacobianOfSpatialJacobian	(	const InputPointType &	,
		SpatialJacobianType &	,
		JacobianOfSpatialJacobianType &	,
		NonZeroJacobianIndicesType &	) const

override

◆ GetJacobianOfSpatialJacobian() [2/2]

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

void itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetJacobianOfSpatialJacobian	(	const InputPointType &	inputPoint,
		JacobianOfSpatialJacobianType &	jsj,
		NonZeroJacobianIndicesType &	nonZeroJacobianIndices ) const

overridevirtual

Implements itk::AdvancedTransform< double, 3, 3 >.

◆ GetLabels()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

virtual ImageLabelType * itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetLabels ( ) const

virtual

◆ GetLocalBases()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

virtual ImageBaseType * itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetLocalBases ( ) const

virtual

◆ GetNbLabels()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

virtual unsigned char itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetNbLabels ( ) const

virtual

◆ GetNumberOfAffectedWeights()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

virtual unsigned int itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetNumberOfAffectedWeights ( ) const

inlinevirtual

Definition at line 312 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ GetNumberOfNonZeroJacobianIndices()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

NumberOfParametersType itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetNumberOfNonZeroJacobianIndices ( ) const

inlineoverridevirtual

Reimplemented from itk::AdvancedTransform< double, 3, 3 >.

Definition at line 319 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ GetNumberOfParameters()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

NumberOfParametersType itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetNumberOfParameters ( ) const

override

Return the number of parameters that completely define the Transform.

◆ GetNumberOfParametersPerDimension()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

virtual NumberOfParametersType itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetNumberOfParametersPerDimension ( ) const

virtual

Return the number of parameters per dimension

◆ GetParameters()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

const ParametersType & itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetParameters ( ) const

override

Get the Transformation Parameters.

◆ GetSpatialHessian()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

void itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetSpatialHessian	(	const InputPointType &	inputPoint,
		SpatialHessianType &	sh ) const

overridevirtual

Compute the spatial Hessian of the transformation.

Implements itk::AdvancedTransform< double, 3, 3 >.

◆ GetSpatialJacobian()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

void itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::GetSpatialJacobian	(	const InputPointType &	inputPoint,
		SpatialJacobianType &	sj ) const

overridevirtual

Compute the spatial Jacobian of the transformation.

Implements itk::AdvancedTransform< double, 3, 3 >.

◆ HasNonZeroJacobianOfSpatialHessian()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

virtual bool itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::HasNonZeroJacobianOfSpatialHessian ( ) const

inlinevirtual

Definition at line 348 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ HasNonZeroJacobianOfSpatialJacobian()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

virtual bool itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::HasNonZeroJacobianOfSpatialJacobian ( ) const

inlinevirtual

Definition at line 334 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ IsLinear()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

bool itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::IsLinear ( ) const

inlineoverride

Indicates that this transform is linear. That is, given two points P and Q, and scalar coefficients a and b, then

      T( a*P + b*Q ) = a * T(P) + b * T(Q)

Definition at line 305 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ ITK_DISALLOW_COPY_AND_MOVE()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::ITK_DISALLOW_COPY_AND_MOVE ( MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder > )

◆ itkOverrideGetNameOfClassMacro()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::itkOverrideGetNameOfClassMacro ( MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder > )

Run-time type information (and related methods).

◆ itkStaticConstMacro() [1/2]

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::itkStaticConstMacro	(	SpaceDimension	,
		unsigned int	,
		NDimensions	)

Dimension of the domain space.

◆ itkStaticConstMacro() [2/2]

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::itkStaticConstMacro	(	SplineOrder	,
		unsigned int	,
		VSplineOrder	)

The BSpline order.

◆ New()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

Pointer itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::New ( )

static

New macro for creation of through the object factory.

◆ PointToLabel()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

void itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::PointToLabel	(	const InputPointType &	p,
		int &	l ) const

private

◆ PrintSelf()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

void itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::PrintSelf	(	std::ostream &	os,
		Indent	indent ) const

overrideprotected

Print contents of an MultiBSplineDeformableTransformWithNormal.

◆ SetFixedParameters()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

void itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::SetFixedParameters ( const ParametersType & parameters )

override

This method sets the fixed parameters of the transform. For a BSpline deformation transform, the parameters are the following: Grid Size, Grid Origin, and Grid Spacing

The fixed parameters are the three times the size of the templated dimensions. This function has the effect of make the following calls: transform->SetGridSpacing( spacing ); transform->SetGridOrigin( origin ); transform->SetGridDirection( direction ); transform->SetGridRegion( bsplineRegion );

This function was added to allow the transform to work with the itkTransformReader/Writer I/O filters.

◆ SetGridDirection()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

virtual void itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::SetGridDirection ( const DirectionType & spacing )

virtual

This method specifies the grid directions .

◆ SetGridOrigin()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

virtual void itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::SetGridOrigin ( const OriginType & origin )

virtual

This method specifies the grid origin.

◆ SetGridRegion()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

virtual void itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::SetGridRegion ( const RegionType & region )

virtual

This method specifies the region over which the grid resides.

◆ SetGridSpacing()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

virtual void itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::SetGridSpacing ( const SpacingType & spacing )

virtual

This method specifies the grid spacing or resolution.

◆ SetIdentity()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

void itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::SetIdentity ( )

This method can ONLY be invoked AFTER calling SetParameters(). This restriction is due to the fact that the AdvancedBSplineDeformableTransform does not copy the array of parameters internally, instead it keeps a pointer to the user-provided array of parameters. This method is also in violation of the const-correctness of the parameters since the parameter array has been passed to the transform on a 'const' basis but the values get modified when the user invokes SetIdentity().

◆ SetLabels()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

void itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::SetLabels ( ImageLabelType * labels )

This method specifies the label image.

◆ SetParameters()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

void itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::SetParameters ( const ParametersType & parameters )

override

This method sets the parameters of the transform. For a BSpline deformation transform, the parameters are the BSpline coefficients on a sparse grid.

The parameters are N number of N-D grid of coefficients. Each N-D grid is represented as a flat array of doubles (in the same configuration as an itk::Image). The N arrays are then concatenated to form one parameter array.

For efficiency, this transform does not make a copy of the parameters. It only keeps a pointer to the input parameters. It assumes that the memory is managed by the caller. Use SetParametersByValue to force the transform to call copy the parameters.

This method wraps each grid as itk::Image's using the user specified grid region, spacing and origin. NOTE: The grid region, spacing and origin must be set first.

◆ SetParametersByValue()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

void itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::SetParametersByValue ( const ParametersType & parameters )

override

This method sets the parameters of the transform. For a BSpline deformation transform, the parameters are the BSpline coefficients on a sparse grid.

The parameters are N number of N-D grid of coefficients. Each N-D grid is represented as a flat array of doubles (in the same configuration as an itk::Image). The N arrays are then concatenated to form one parameter array.

This methods makes a copy of the parameters while for efficiency the SetParameters method does not.

This method wraps each grid as itk::Image's using the user specified grid region, spacing and origin. NOTE: The grid region, spacing and origin must be set first.

◆ TransformCovariantVector()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

OutputCovariantVectorType itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::TransformCovariantVector ( const InputCovariantVectorType & ) const

inlineoverride

Method to transform a CovariantVector - not applicable for this type of transform.

Definition at line 284 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ TransformPoint()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

OutputPointType itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::TransformPoint ( const InputPointType & point ) const

override

Transform points by a BSpline deformable transformation.

◆ TransformVector() [1/2]

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

OutputVectorType itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::TransformVector ( const InputVectorType & ) const

inlineoverride

Method to transform a vector - not applicable for this type of transform.

Definition at line 262 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ TransformVector() [2/2]

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

OutputVnlVectorType itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::TransformVector ( const InputVnlVectorType & ) const

inlineoverride

Method to transform a vnl_vector - not applicable for this type of transform.

Definition at line 273 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ UpdateLocalBases()

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

void itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::UpdateLocalBases ( )

Update Local Bases : call to it should become automatic and the function should become private

Member Data Documentation

◆ m_InputParametersPointer

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

const ParametersType* itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::m_InputParametersPointer {}

private

Wrap flat array into images of coefficients. Convert an input point to a continuous index inside the BSpline grid. Check if a continuous index is inside the valid region. The bulk transform. Array of images representing the B-spline coefficients in each dimension. Variables defining the coefficient grid extend. Variables defining the interpolation support region. Odd or even order BSpline. Keep a pointer to the input parameters.

Definition at line 460 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ m_InternalParametersBuffer

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

ParametersType itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::m_InternalParametersBuffer {}

private

Keep track of last support region used in computing the Jacobian for fast resetting of Jacobian to zero. Array holding images wrapped from the flat parameters. Internal parameters buffer.

Definition at line 471 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ m_Labels

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

ImageLabelPointer itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::m_Labels {}

private

Definition at line 476 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ m_LabelsInterpolator

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

ImageLabelInterpolatorPointer itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::m_LabelsInterpolator {}

private

Definition at line 477 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ m_LabelsNormals

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

ImageVectorPointer itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::m_LabelsNormals {}

private

Definition at line 478 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ m_LastJacobian

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

int itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::m_LastJacobian {}

mutableprivate

Definition at line 481 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ m_LocalBases

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

ImageBasePointer itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::m_LocalBases {}

private

Definition at line 482 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ m_NbLabels

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

unsigned char itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::m_NbLabels {}

private

Definition at line 475 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ m_Para

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

std::vector<ParametersType> itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::m_Para {}

private

Definition at line 480 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ m_Trans

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

std::vector<typename TransformType::Pointer> itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::m_Trans {}

private

Definition at line 479 of file itkMultiBSplineDeformableTransformWithNormal.h.

◆ NumberOfWeights

template<typename TScalarType = double, unsigned int NDimensions = 3, unsigned int VSplineOrder = 3>

unsigned itk::MultiBSplineDeformableTransformWithNormal< TScalarType, NDimensions, VSplineOrder >::NumberOfWeights = TransformType::NumberOfWeights

staticconstexprprivate

The number of weights.

Definition at line 489 of file itkMultiBSplineDeformableTransformWithNormal.h.

Detailed Description

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Private Types

Private Member Functions

Private Attributes

Static Private Attributes

Additional Inherited Members

Member Typedef Documentation

◆ BaseType

◆ ConstPointer

◆ ContinuousIndexType

◆ DirectionType

◆ GridOffsetType

◆ ImageBasePointer

◆ ImageBaseType

◆ ImageLabelInterpolator

◆ ImageLabelInterpolatorPointer

◆ ImageLabelPointer

◆ ImageLabelType

◆ ImagePointer

◆ ImageType

◆ ImageVectorPointer

◆ ImageVectorType

◆ IndexType

◆ InternalMatrixType

◆ JacobianOfSpatialHessianType

◆ JacobianOfSpatialJacobianType

◆ NonZeroJacobianIndicesType

◆ OriginType

◆ ParameterIndexArrayType

◆ Pointer

◆ RegionType

◆ Self

◆ SizeType

◆ SpacingType

◆ SpatialHessianType

◆ SpatialJacobianType

◆ Superclass

◆ TransformType

◆ VectorType

Constructor & Destructor Documentation

◆ MultiBSplineDeformableTransformWithNormal()

◆ ~MultiBSplineDeformableTransformWithNormal()

Member Function Documentation

◆ DispatchParameters()

◆ GetFixedParameters()

◆ GetGridDirection()

◆ GetGridOrigin()

◆ GetGridRegion()

◆ GetGridSpacing()

◆ GetHasNonZeroSpatialHessian()

◆ GetHasNonZeroSpatialJacobian()

◆ GetJacobian()

◆ GetJacobianOfSpatialHessian() [1/2]

◆ GetJacobianOfSpatialHessian() [2/2]

◆ GetJacobianOfSpatialJacobian() [1/2]

◆ GetJacobianOfSpatialJacobian() [2/2]

◆ GetLabels()

◆ GetLocalBases()

◆ GetNbLabels()

◆ GetNumberOfAffectedWeights()

◆ GetNumberOfNonZeroJacobianIndices()

◆ GetNumberOfParameters()

◆ GetNumberOfParametersPerDimension()

◆ GetParameters()

◆ GetSpatialHessian()

◆ GetSpatialJacobian()

◆ HasNonZeroJacobianOfSpatialHessian()

◆ HasNonZeroJacobianOfSpatialJacobian()

◆ IsLinear()

◆ ITK_DISALLOW_COPY_AND_MOVE()

◆ itkOverrideGetNameOfClassMacro()

◆ itkStaticConstMacro() [1/2]

◆ itkStaticConstMacro() [2/2]

◆ New()

◆ PointToLabel()

◆ PrintSelf()