elxTransformixMain.h

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/*=========================================================================
 *
 *  Copyright UMC Utrecht and contributors
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *        http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef elxTransformixMain_h
#define elxTransformixMain_h
 
#include "elxMainBase.h"
#include <itkTransformBase.h>
 
namespace elastix
{
class TransformixMain : public MainBase
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(TransformixMain);
 
  using Self = TransformixMain;
  using Superclass = MainBase;
  using Pointer = itk::SmartPointer<Self>;
  using ConstPointer = itk::SmartPointer<const Self>;
 
  itkNewMacro(Self);
 
  itkTypeMacro(TransformixMain, ElastixMain);
 
  using Superclass::ObjectPointer;
  using Superclass::DataObjectPointer;
 
  using Superclass::ArgumentMapType;
  using Superclass::ObjectContainerType;
  using Superclass::DataObjectContainerType;
  using Superclass::ObjectContainerPointer;
  using Superclass::DataObjectContainerPointer;
 
  using Superclass::ComponentDatabasePointer;
  using Superclass::PtrToCreator;
  using Superclass::ComponentDescriptionType;
  using Superclass::PixelTypeDescriptionType;
  using Superclass::ImageDimensionType;
  using Superclass::DBIndexType;
 
  using Superclass::ParameterMapType;
 
  using Superclass::Run;
 
  int
  Run() override;
 
  int
  Run(const ArgumentMapType &               argmap,
      const std::vector<ParameterMapType> & transformParameterMaps,
      itk::TransformBase * = nullptr);
 
  virtual void
  SetInputImageContainer(DataObjectContainerType * inputImageContainer);
 
protected:
  TransformixMain() = default;
  ~TransformixMain() override;
 
  int
  InitDBIndex() override;
 
private:
  int
  RunWithTransform(itk::TransformBase *);
 
  // Version used when transformix is used as a library.
  void
  EnterCommandLineArgumentsWithTransformParameterMaps(const ArgumentMapType &               argmap,
                                                      const std::vector<ParameterMapType> & transformParameterMaps);
};
 
} // end namespace elastix
 
#endif // end #ifndef elxTransformixMain_h