#include <elxTransformixMain.h>

Detailed Description

A class with all functionality to configure transformix.

The TransformixMain class inherits from ElastixMain. We overwrite the Run() -function. In the new Run() the Run()-function from the ElastixTemplate-class is not called (as in elxElastixMain.cxx), because this time we don't want to start a registration, but just apply a transformation to an input image.

Definition at line 39 of file elxTransformixMain.h.

Inheritance diagram for elastix::TransformixMain:

[legend]

Public Types
using	ArgumentMapType
using	ComponentDatabasePointer
using	ComponentDescriptionType
using	ConstPointer = itk::SmartPointer<const Self>
using	DataObjectContainerPointer
using	DataObjectContainerType
using	DataObjectPointer
using	DBIndexType
using	ImageDimensionType
using	ObjectContainerPointer
using	ObjectContainerType
using	ObjectPointer
using	ParameterMapType
using	PixelTypeDescriptionType
using	Pointer = itk::SmartPointer<Self>
using	PtrToCreator
using	Self = TransformixMain
using	Superclass = MainBase
Public Types inherited from elastix::MainBase
using	ArgumentMapType = Configuration::CommandLineArgumentMapType
using	ComponentDatabasePointer = ComponentDatabase::Pointer
using	ComponentDescriptionType = ComponentDatabase::ComponentDescriptionType
using	ConstPointer = itk::SmartPointer<const Self>
using	DataObjectContainerPointer = ElastixBase::DataObjectContainerPointer
using	DataObjectContainerType = ElastixBase::DataObjectContainerType
using	DataObjectPointer = itk::DataObject::Pointer
using	DBIndexType = ComponentDatabase::IndexType
using	FlatDirectionCosinesType = ElastixBase::FlatDirectionCosinesType
using	ImageDimensionType = ComponentDatabase::ImageDimensionType
using	ObjectContainerPointer = ElastixBase::ObjectContainerPointer
using	ObjectContainerType = ElastixBase::ObjectContainerType
using	ObjectPointer = itk::Object::Pointer
using	ParameterMapType = itk::ParameterMapInterface::ParameterMapType
using	PixelTypeDescriptionType = ComponentDatabase::PixelTypeDescriptionType
using	Pointer = itk::SmartPointer<Self>
using	PtrToCreator = ComponentDatabase::PtrToCreator
using	Self = MainBase
using	Superclass = itk::Object

Public Member Functions
	ITK_DISALLOW_COPY_AND_MOVE (TransformixMain)
	itkOverrideGetNameOfClassMacro (TransformixMain)
int	Run () override
virtual int	Run (const ArgumentMapType &argmap)
virtual int	Run (const ArgumentMapType &argmap, const ParameterMapType &inputMap)
int	Run (const ArgumentMapType &argmap, const std::vector< ParameterMapType > &transformParameterMaps, itk::TransformBase *=nullptr)
virtual void	SetInputImageContainer (DataObjectContainerType *inputImageContainer)
Public Member Functions inherited from elastix::MainBase
virtual DBIndexType	GetDBIndex () const
ElastixBase &	GetElastixBase () const
virtual ImageDimensionType	GetFixedImageDimension () const
virtual PixelTypeDescriptionType	GetFixedImagePixelType () const
virtual ImageDimensionType	GetMovingImageDimension () const
virtual PixelTypeDescriptionType	GetMovingImagePixelType () const
	ITK_DISALLOW_COPY_AND_MOVE (MainBase)
	itkGetModifiableObjectMacro (Configuration, Configuration)
	itkGetModifiableObjectMacro (Elastix, itk::Object)
	itkGetModifiableObjectMacro (MovingImageContainer, DataObjectContainerType)
	itkGetModifiableObjectMacro (ResultDeformationFieldContainer, DataObjectContainerType)
	itkGetModifiableObjectMacro (ResultImageContainer, DataObjectContainerType)
	itkOverrideGetNameOfClassMacro (MainBase)
virtual void	SetConfiguration (Configuration *_arg)
virtual void	SetFixedImageDimension (ImageDimensionType _arg)
virtual void	SetFixedImagePixelType (PixelTypeDescriptionType _arg)
virtual void	SetMaximumNumberOfThreads () const
virtual void	SetMovingImageContainer (DataObjectContainerType *_arg)
virtual void	SetMovingImageDimension (ImageDimensionType _arg)
virtual void	SetMovingImagePixelType (PixelTypeDescriptionType _arg)
virtual void	SetProcessPriority () const
virtual void	SetResultDeformationFieldContainer (DataObjectContainerType *_arg)
virtual void	SetResultImageContainer (DataObjectContainerType *_arg)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from elastix::MainBase
static const ComponentDatabase &	GetComponentDatabase ()

Protected Member Functions
int	InitDBIndex () override
	TransformixMain ()=default
	~TransformixMain () override
Protected Member Functions inherited from elastix::MainBase
virtual ObjectPointer	CreateComponent (const ComponentDescriptionType &name)
virtual ObjectContainerPointer	CreateComponents (const ComponentDescriptionType &key, const ComponentDescriptionType &defaultComponentName, int &errorcode, bool mandatoryComponent=true)
	MainBase ()
	~MainBase () override=0

Private Member Functions
void	EnterCommandLineArgumentsWithTransformParameterMaps (const ArgumentMapType &argmap, const std::vector< ParameterMapType > &transformParameterMaps)
int	RunWithTransform (itk::TransformBase *)

Additional Inherited Members
Protected Attributes inherited from elastix::MainBase
DBIndexType	m_DBIndex { 0 }
ObjectPointer	m_Elastix { nullptr }
ImageDimensionType	m_FixedImageDimension { 0 }
PixelTypeDescriptionType	m_FixedImagePixelType {}
DataObjectContainerPointer	m_MovingImageContainer { nullptr }
ImageDimensionType	m_MovingImageDimension { 0 }
PixelTypeDescriptionType	m_MovingImagePixelType {}
DataObjectContainerPointer	m_ResultDeformationFieldContainer { nullptr }
DataObjectContainerPointer	m_ResultImageContainer { nullptr }
std::vector< Configuration::ConstPointer >	m_TransformConfigurations {}

Member Typedef Documentation

◆ ArgumentMapType

using elastix::MainBase::ArgumentMapType

Elastix components.

Definition at line 65 of file elxMainBase.h.

◆ ComponentDatabasePointer

using elastix::MainBase::ComponentDatabasePointer

Typedefs for the database that holds pointers to New() functions. Those functions are used to instantiate components, such as the metric etc.

Definition at line 75 of file elxMainBase.h.

◆ ComponentDescriptionType

using elastix::MainBase::ComponentDescriptionType

Definition at line 77 of file elxMainBase.h.

◆ ConstPointer

using elastix::TransformixMain::ConstPointer = itk::SmartPointer<const Self>

Definition at line 48 of file elxTransformixMain.h.

◆ DataObjectContainerPointer

using elastix::MainBase::DataObjectContainerPointer

Definition at line 69 of file elxMainBase.h.

◆ DataObjectContainerType

using elastix::MainBase::DataObjectContainerType

Definition at line 67 of file elxMainBase.h.

◆ DataObjectPointer

using elastix::MainBase::DataObjectPointer

Definition at line 62 of file elxMainBase.h.

◆ DBIndexType

using elastix::MainBase::DBIndexType

Definition at line 80 of file elxMainBase.h.

◆ ImageDimensionType

using elastix::MainBase::ImageDimensionType

Definition at line 79 of file elxMainBase.h.

◆ ObjectContainerPointer

using elastix::MainBase::ObjectContainerPointer

Definition at line 68 of file elxMainBase.h.

◆ ObjectContainerType

using elastix::MainBase::ObjectContainerType

Definition at line 66 of file elxMainBase.h.

◆ ObjectPointer

using elastix::MainBase::ObjectPointer

Typedef's from Superclass. typedef's from itk base Object.

Definition at line 61 of file elxMainBase.h.

◆ ParameterMapType

using elastix::MainBase::ParameterMapType

Typedef that is used in the elastix dll version.

Definition at line 83 of file elxMainBase.h.

◆ PixelTypeDescriptionType

using elastix::MainBase::PixelTypeDescriptionType

Definition at line 78 of file elxMainBase.h.

◆ Pointer

using elastix::TransformixMain::Pointer = itk::SmartPointer<Self>

Definition at line 47 of file elxTransformixMain.h.

◆ PtrToCreator

using elastix::MainBase::PtrToCreator

Definition at line 76 of file elxMainBase.h.

◆ Self

using elastix::TransformixMain::Self = TransformixMain

Standard itk.

Definition at line 45 of file elxTransformixMain.h.

◆ Superclass

using elastix::TransformixMain::Superclass = MainBase

Definition at line 46 of file elxTransformixMain.h.

Constructor & Destructor Documentation

◆ TransformixMain()

elastix::TransformixMain::TransformixMain ( )

protecteddefault

◆ ~TransformixMain()

elastix::TransformixMain::~TransformixMain ( )

overrideprotected

Member Function Documentation

◆ EnterCommandLineArgumentsWithTransformParameterMaps()

void elastix::TransformixMain::EnterCommandLineArgumentsWithTransformParameterMaps	(	const ArgumentMapType &	argmap,
		const std::vector< ParameterMapType > &	transformParameterMaps )

private

◆ InitDBIndex()

int elastix::TransformixMain::InitDBIndex ( )

overrideprotectedvirtual

InitDBIndex sets m_DBIndex to the value obtained from the ComponentDatabase.

Implements elastix::MainBase.

◆ ITK_DISALLOW_COPY_AND_MOVE()

elastix::TransformixMain::ITK_DISALLOW_COPY_AND_MOVE ( TransformixMain )

◆ itkOverrideGetNameOfClassMacro()

elastix::TransformixMain::itkOverrideGetNameOfClassMacro ( TransformixMain )

Run-time type information (and related methods).

◆ New()

Pointer elastix::TransformixMain::New ( )

static

Method for creation through the object factory.

◆ Run() [1/4]

int elastix::TransformixMain::Run ( )

overridevirtual

Overwrite Run() from base-class.

Implements elastix::MainBase.

◆ Run() [2/4]

virtual int elastix::MainBase::Run ( const ArgumentMapType & argmap )

virtual

Start the registration this version of 'run' first calls this->EnterCommandLineParameters(argc,argv) and then calls run().

Reimplemented from elastix::MainBase.

◆ Run() [3/4]

virtual int elastix::MainBase::Run	(	const ArgumentMapType &	argmap,
		const ParameterMapType &	inputMap )

virtual

Reimplemented from elastix::MainBase.

◆ Run() [4/4]

int elastix::TransformixMain::Run	(	const ArgumentMapType &	argmap,
		const std::vector< ParameterMapType > &	transformParameterMaps,
		itk::TransformBase *	= nullptr )

Run version for using transformix as library.

◆ RunWithTransform()

int elastix::TransformixMain::RunWithTransform ( itk::TransformBase * )

private

Does Run with an optionally specified Transform.

◆ SetInputImageContainer()

virtual void elastix::TransformixMain::SetInputImageContainer ( DataObjectContainerType * inputImageContainer )

virtual

Get and Set input- and outputImage.

Detailed Description

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Private Member Functions

Additional Inherited Members

Member Typedef Documentation

◆ ArgumentMapType

◆ ComponentDatabasePointer

◆ ComponentDescriptionType

◆ ConstPointer

◆ DataObjectContainerPointer

◆ DataObjectContainerType

◆ DataObjectPointer

◆ DBIndexType

◆ ImageDimensionType

◆ ObjectContainerPointer

◆ ObjectContainerType

◆ ObjectPointer

◆ ParameterMapType

◆ PixelTypeDescriptionType

◆ Pointer

◆ PtrToCreator

◆ Self

◆ Superclass

Constructor & Destructor Documentation

◆ TransformixMain()

◆ ~TransformixMain()

Member Function Documentation

◆ EnterCommandLineArgumentsWithTransformParameterMaps()

◆ InitDBIndex()

◆ ITK_DISALLOW_COPY_AND_MOVE()

◆ itkOverrideGetNameOfClassMacro()

◆ New()

◆ Run() [1/4]

◆ Run() [2/4]

◆ Run() [3/4]

◆ Run() [4/4]

◆ RunWithTransform()

◆ SetInputImageContainer()