elastix::TransformIO Class Reference

#include <elxTransformIO.h>

Detailed Description

Definition at line 36 of file elxTransformIO.h.

Static Public Member Functions
static std::string	ConvertITKNameOfClassToElastixClassName (const std::string &itkNameOfClass)
template<unsigned NDimension>
static itk::SmartPointer< itk::CompositeTransform< double, NDimension > >	ConvertToCompositionOfItkTransforms (const itk::AdvancedCombinationTransform< double, NDimension > &advancedCombinationTransform)
template<unsigned NDimension>
static itk::SmartPointer< itk::CompositeTransform< double, NDimension > >	ConvertToItkCompositeTransform (const itk::AdvancedCombinationTransform< double, NDimension > &advancedCombinationTransform)
template<unsigned NDimension>
static itk::SmartPointer< itk::Transform< double, NDimension, NDimension > >	ConvertToSingleItkTransform (const itk::Transform< double, NDimension, NDimension > &elxTransform)
static itk::OptimizerParameters< double >	GetParameters (const bool fixed, const itk::TransformBase &transform)
template<typename TElastixTransform >
static std::string	MakeDeformationFieldFileName (const TElastixTransform &elxTransform)
static itk::TransformBase::Pointer	Read (const std::string &fileName)
static void	SetParameters (const bool fixed, itk::TransformBase &transform, const itk::OptimizerParameters< double > &parameters)
static void	Write (const itk::Object &itkTransform, const std::string &fileName)

Static Private Member Functions
static itk::TransformBase::Pointer	ConvertItkTransformBaseToSingleItkTransform (const itk::TransformBase &elxTransform)
static std::string	MakeDeformationFieldFileName (const Configuration &configuration, const std::string &transformParameterFileName)

Member Function Documentation

ConvertITKNameOfClassToElastixClassName()

static std::string elastix::TransformIO::ConvertITKNameOfClassToElastixClassName ( const std::string & itkNameOfClass )

static

Converts the name of an ITK Transform class (as returned by GetNameOfClass()) to the corresponding elastix class name (as returned by elxGetClassName()).

ConvertItkTransformBaseToSingleItkTransform()

static itk::TransformBase::Pointer elastix::TransformIO::ConvertItkTransformBaseToSingleItkTransform ( const itk::TransformBase & elxTransform )

staticprivate

ConvertToCompositionOfItkTransforms()

template<unsigned NDimension>

static itk::SmartPointer< itk::CompositeTransform< double, NDimension > > elastix::TransformIO::ConvertToCompositionOfItkTransforms ( const itk::AdvancedCombinationTransform< double, NDimension > & advancedCombinationTransform )

inlinestatic

Converts the specified combination of transforms from elastix to the corresponding composition of ITK transform. Returns null when the combination transform does not use composition, or when some of the transforms does not have a corresponding ITK transform.

Definition at line 92 of file elxTransformIO.h.

ConvertToItkCompositeTransform()

template<unsigned NDimension>

static itk::SmartPointer< itk::CompositeTransform< double, NDimension > > elastix::TransformIO::ConvertToItkCompositeTransform ( const itk::AdvancedCombinationTransform< double, NDimension > & advancedCombinationTransform )

inlinestatic

Converts the specified combination transform from elastix to the corresponding ITK composite transform. Returns null when the combination transform does not use composition.

Definition at line 63 of file elxTransformIO.h.

ConvertToSingleItkTransform()

template<unsigned NDimension>

static itk::SmartPointer< itk::Transform< double, NDimension, NDimension > > elastix::TransformIO::ConvertToSingleItkTransform ( const itk::Transform< double, NDimension, NDimension > & elxTransform )

inlinestatic

Converts the specified single transform from elastix to the corresponding ITK transform. Returns null when ITK has no transform type that corresponds with this elastix transform.

Definition at line 125 of file elxTransformIO.h.

GetParameters()

static itk::OptimizerParameters< double > elastix::TransformIO::GetParameters ( const bool fixed, const itk::TransformBase & transform )

inlinestatic

Definition at line 40 of file elxTransformIO.h.

MakeDeformationFieldFileName() [1/2]

static std::string elastix::TransformIO::MakeDeformationFieldFileName ( const Configuration & configuration, const std::string & transformParameterFileName )

staticprivate

MakeDeformationFieldFileName() [2/2]

template<typename TElastixTransform >

static std::string elastix::TransformIO::MakeDeformationFieldFileName ( const TElastixTransform & elxTransform )

inlinestatic

Makes the deformation field file name, as used by BSplineTransformWithDiffusion and DeformationFieldTransform.

Definition at line 153 of file elxTransformIO.h.

Read()

static itk::TransformBase::Pointer elastix::TransformIO::Read ( const std::string & fileName )

static

SetParameters()

static void elastix::TransformIO::SetParameters ( const bool fixed, itk::TransformBase & transform, const itk::OptimizerParameters< double > & parameters )

inlinestatic

Definition at line 46 of file elxTransformIO.h.

Write()

static void elastix::TransformIO::Write ( const itk::Object & itkTransform, const std::string & fileName )

static

Writes the specified transform to file.

Note

The transform parameter type is a reference to itk::Object, rather than itk::TransformBase, to support the use case of ElastixRegistrationMethod::GenerateData(), which uses an itk::Object pointer to an external transform.