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itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage > Class Template Reference

#include <itkKNNGraphAlphaMutualInformationImageToImageMetric.h>

Detailed Description

template<typename TFixedImage, typename TMovingImage>
class itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >

Computes similarity between two images to be registered.

This metric computes the alpha-Mutual Information (aMI) between two multi-channeled data sets. Said otherwise, given two sets of features, the aMI between them is calculated. Since for higher dimensional aMI it is infeasible to compute high dimensional joint histograms, here we adopt a framework based on the length of certain graphs, see Neemuchwala. Specifically, we use the k-Nearest Neighbour (kNN) graph, using an implementation provided by the Approximate Nearest Neighbour (ANN) software package.

Note that the feature image are given beforehand, and that values are calculated by interpolation on the transformed point. For some features, it would be better (but slower) to first apply the transform on the image and then recalculate the feature.

All the technical details can be found in:
M. Staring, U.A. van der Heide, S. Klein, M.A. Viergever and J.P.W. Pluim, "Registration of Cervical MRI Using Multifeature Mutual Information," IEEE Transactions on Medical Imaging, vol. 28, no. 9, pp. 1412 - 1421, September 2009.

Definition at line 74 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

Inheritance diagram for itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >:

Public Types

using ANNbdTreeType = ANNbdTree<ListSampleType>
using ANNBruteForceTreeType = ANNBruteForceTree<ListSampleType>
using ANNFixedRadiusTreeSearchType = ANNFixedRadiusTreeSearch<ListSampleType>
using ANNkDTreeType = ANNkDTree<ListSampleType>
using ANNPriorityTreeSearchType = ANNPriorityTreeSearch<ListSampleType>
using ANNStandardTreeSearchType = ANNStandardTreeSearch<ListSampleType>
using BinaryKNNTreePointer = typename BinaryKNNTreeType::Pointer
using BinaryKNNTreeSearchPointer = typename BinaryKNNTreeSearchType::Pointer
using BinaryKNNTreeSearchType = BinaryTreeSearchBase<ListSampleType>
using BinaryKNNTreeType = BinaryTreeBase<ListSampleType>
using ConstPointer = SmartPointer<const Self>
using DistanceArrayType = typename BinaryKNNTreeSearchType::DistanceArrayType
using FixedImageInterpolatorVectorType
using FixedImageMaskPointer
using FixedImageMaskType
using FixedImageMaskVectorType
using FixedImageRegionVectorType
using FixedImageVectorType
using IndexArrayType = typename BinaryKNNTreeSearchType::IndexArrayType
using InterpolatorVectorType
using ListSamplePointer = typename ListSampleType::Pointer
using ListSampleType = typename Statistics::ListSampleCArray<MeasurementVectorType, double>
using MeasurementVectorType = Array<double>
using MeasurementVectorValueType = typename MeasurementVectorType::ValueType
using MovingImageMaskPointer
using MovingImageMaskType
using MovingImageMaskVectorType
using MovingImageVectorType
using Pointer = SmartPointer<Self>
using Self = KNNGraphAlphaMutualInformationImageToImageMetric
using Superclass = MultiInputImageToImageMetricBase<TFixedImage, TMovingImage>
using TransformJacobianValueType = typename TransformJacobianType::ValueType
Public Types inherited from itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >
using ConstPointer = SmartPointer<const Self>
using FixedImageInterpolatorPointer = typename FixedImageInterpolatorType::Pointer
using FixedImageInterpolatorType = InterpolateImageFunction<FixedImageType, CoordinateRepresentationType>
using FixedImageInterpolatorVectorType = std::vector<FixedImageInterpolatorPointer>
using FixedImageMaskConstPointer
using FixedImageMaskPointer
using FixedImageMaskType
using FixedImageMaskVectorType = std::vector<FixedImageMaskConstPointer>
using FixedImagePointer
using FixedImageRegionVectorType = std::vector<FixedImageRegionType>
using FixedImageVectorType = std::vector<FixedImageConstPointer>
using InterpolatorVectorType = std::vector<InterpolatorPointer>
using MovingImageMaskConstPointer
using MovingImageMaskPointer
using MovingImageMaskType
using MovingImageMaskVectorType = std::vector<MovingImageMaskConstPointer>
using MovingImagePointer
using MovingImageVectorType = std::vector<MovingImageConstPointer>
using Pointer = SmartPointer<Self>
using Self = MultiInputImageToImageMetricBase
using Superclass = AdvancedImageToImageMetric<TFixedImage, TMovingImage>
Public Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
using AdvancedTransformType = AdvancedTransform<ScalarType, FixedImageDimension, MovingImageDimension>
using BSplineOrder1TransformPointer = typename BSplineOrder1TransformType::Pointer
using BSplineOrder1TransformType = AdvancedBSplineDeformableTransform<ScalarType, FixedImageDimension, 1>
using BSplineOrder2TransformPointer = typename BSplineOrder2TransformType::Pointer
using BSplineOrder2TransformType = AdvancedBSplineDeformableTransform<ScalarType, FixedImageDimension, 2>
using BSplineOrder3TransformPointer = typename BSplineOrder3TransformType::Pointer
using BSplineOrder3TransformType = AdvancedBSplineDeformableTransform<ScalarType, FixedImageDimension, 3>
using CombinationTransformType = AdvancedCombinationTransform<ScalarType, FixedImageDimension>
using ConstPointer = SmartPointer<const Self>
using DerivativeValueType = typename DerivativeType::ValueType
using FixedImageLimiterOutputType = typename FixedImageLimiterType::OutputType
using FixedImageLimiterPointer = typename FixedImageLimiterType::Pointer
using FixedImageLimiterType = LimiterFunctionBase<RealType, FixedImageDimension>
using FixedImageMaskConstPointer = SmartPointer<const FixedImageMaskType>
using FixedImageMaskPointer = SmartPointer<FixedImageMaskType>
using FixedImageMaskType = ImageMaskSpatialObject<Self::FixedImageDimension>
using FixedImagePixelType = typename FixedImageType::PixelType
using FixedImagePointer = typename FixedImageType::Pointer
using ImageSampleContainerPointer = typename ImageSamplerType::OutputVectorContainerPointer
using ImageSampleContainerType = typename ImageSamplerType::OutputVectorContainerType
using ImageSamplerPointer = typename ImageSamplerType::Pointer
using ImageSamplerType = ImageSamplerBase<FixedImageType>
using MovingImageDerivativeScalesType = FixedArray<double, Self::MovingImageDimension>
using MovingImageLimiterOutputType = typename MovingImageLimiterType::OutputType
using MovingImageLimiterPointer = typename MovingImageLimiterType::Pointer
using MovingImageLimiterType = LimiterFunctionBase<RealType, MovingImageDimension>
using MovingImageMaskConstPointer = SmartPointer<const MovingImageMaskType>
using MovingImageMaskPointer = SmartPointer<MovingImageMaskType>
using MovingImageMaskType = ImageMaskSpatialObject<Self::MovingImageDimension>
using MovingImagePointer = typename MovingImageType::Pointer
using MovingImageRegionType = typename MovingImageType::RegionType
using NumberOfParametersType = typename AdvancedTransformType::NumberOfParametersType
using Pointer = SmartPointer<Self>
using ScalarType = typename TransformType::ScalarType
using Self = AdvancedImageToImageMetric
using Superclass = ImageToImageMetric<TFixedImage, TMovingImage>
using ThreadInfoType = MultiThreaderBase::WorkUnitInfo

Public Member Functions

virtual const doubleGetAlpha ()
virtual const doubleGetAvoidDivisionBy ()
void GetDerivative (const ParametersType &parameters, DerivativeType &Derivative) const override
MeasureType GetValue (const ParametersType &parameters) const override
void GetValueAndDerivative (const ParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const override
void Initialize () override
 ITK_DISALLOW_COPY_AND_MOVE (KNNGraphAlphaMutualInformationImageToImageMetric)
 itkOverrideGetNameOfClassMacro (KNNGraphAlphaMutualInformationImageToImageMetric)
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
virtual void SetAlpha (double _arg)
void SetANNbdTree (unsigned int bucketSize, std::string splittingRule, std::string shrinkingRule)
void SetANNbdTree (unsigned int bucketSize, std::string splittingRuleFixed, std::string splittingRuleMoving, std::string splittingRuleJoint, std::string shrinkingRuleFixed, std::string shrinkingRuleMoving, std::string shrinkingRuleJoint)
void SetANNBruteForceTree ()
void SetANNFixedRadiusTreeSearch (unsigned int kNearestNeighbors, double errorBound, double squaredRadius)
void SetANNkDTree (unsigned int bucketSize, std::string splittingRule)
void SetANNkDTree (unsigned int bucketSize, std::string splittingRuleFixed, std::string splittingRuleMoving, std::string splittingRuleJoint)
void SetANNPriorityTreeSearch (unsigned int kNearestNeighbors, double errorBound)
void SetANNStandardTreeSearch (unsigned int kNearestNeighbors, double errorBound)
virtual void SetAvoidDivisionBy (double _arg)
Public Member Functions inherited from itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >
const FixedImageType * GetFixedImage () const override
virtual const FixedImageType * GetFixedImage (unsigned int pos) const
virtual FixedImageInterpolatorTypeGetFixedImageInterpolator () const
virtual FixedImageInterpolatorTypeGetFixedImageInterpolator (unsigned int pos) const
const FixedImageMaskTypeGetFixedImageMask () const override
virtual const FixedImageMaskTypeGetFixedImageMask (unsigned int pos) const
const FixedImageRegionType & GetFixedImageRegion () const override
virtual const FixedImageRegionType & GetFixedImageRegion (unsigned int pos) const
const InterpolatorType * GetInterpolator () const override
InterpolatorType * GetInterpolator () override
virtual InterpolatorType * GetInterpolator (unsigned int pos) const
virtual bool GetInterpolatorsAreBSpline () const
const MovingImageType * GetMovingImage () const override
virtual const MovingImageType * GetMovingImage (unsigned int pos) const
const MovingImageMaskTypeGetMovingImageMask () const override
virtual const MovingImageMaskTypeGetMovingImageMask (unsigned int pos) const
virtual unsigned int GetNumberOfFixedImageInterpolators () const
virtual unsigned int GetNumberOfFixedImageMasks () const
virtual unsigned int GetNumberOfFixedImageRegions () const
virtual unsigned int GetNumberOfFixedImages () const
virtual unsigned int GetNumberOfInterpolators () const
virtual unsigned int GetNumberOfMovingImageMasks () const
virtual unsigned int GetNumberOfMovingImages () const
void Initialize () override
 ITK_DISALLOW_COPY_AND_MOVE (MultiInputImageToImageMetricBase)
 itkOverrideGetNameOfClassMacro (MultiInputImageToImageMetricBase)
 itkSetNumberOfMacro (FixedImage)
 itkSetNumberOfMacro (FixedImageInterpolator)
 itkSetNumberOfMacro (FixedImageMask)
 itkSetNumberOfMacro (FixedImageRegion)
 itkSetNumberOfMacro (Interpolator)
 itkSetNumberOfMacro (MovingImage)
 itkSetNumberOfMacro (MovingImageMask)
 itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)
 itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension)
void SetFixedImage (const FixedImageType *_arg) override
virtual void SetFixedImage (const FixedImageType *_arg, unsigned int pos)
virtual void SetFixedImageInterpolator (FixedImageInterpolatorType *_arg)
virtual void SetFixedImageInterpolator (FixedImageInterpolatorType *_arg, unsigned int pos)
void SetFixedImageMask (const FixedImageMaskType *_arg) override
virtual void SetFixedImageMask (const FixedImageMaskType *_arg, unsigned int pos)
void SetFixedImageRegion (const FixedImageRegionType _arg) override
virtual void SetFixedImageRegion (const FixedImageRegionType _arg, unsigned int pos)
void SetInterpolator (InterpolatorType *_arg) override
virtual void SetInterpolator (InterpolatorType *_arg, unsigned int pos)
void SetMovingImage (const MovingImageType *_arg) override
virtual void SetMovingImage (const MovingImageType *_arg, unsigned int pos)
void SetMovingImageMask (const MovingImageMaskType *_arg) override
virtual void SetMovingImageMask (const MovingImageMaskType *_arg, unsigned int pos)
Public Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
virtual void BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const
virtual const FixedImageLimiterTypeGetFixedImageLimiter ()
const FixedImageMaskTypeGetFixedImageMask () const override
virtual double GetFixedLimitRangeRatio () const
ImageSamplerTypeGetImageSampler () const
virtual const MovingImageDerivativeScalesTypeGetMovingImageDerivativeScales ()
virtual const MovingImageLimiterTypeGetMovingImageLimiter ()
const MovingImageMaskTypeGetMovingImageMask () const override
virtual double GetMovingLimitRangeRatio () const
virtual double GetRequiredRatioOfValidSamples () const
virtual bool GetScaleGradientWithRespectToMovingImageOrientation () const
const AdvancedTransformTypeGetTransform () const override
AdvancedTransformTypeGetTransform () override
virtual bool GetUseFixedImageLimiter () const
virtual bool GetUseImageSampler () const
virtual const boolGetUseMetricSingleThreaded ()
virtual bool GetUseMovingImageDerivativeScales () const
virtual bool GetUseMovingImageLimiter () const
virtual const boolGetUseMultiThread ()
void Initialize () override
 ITK_DISALLOW_COPY_AND_MOVE (AdvancedImageToImageMetric)
 itkOverrideGetNameOfClassMacro (AdvancedImageToImageMetric)
 itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)
 itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension)
virtual void SetFixedImageLimiter (FixedImageLimiterType *_arg)
virtual void SetFixedLimitRangeRatio (double _arg)
virtual void SetImageSampler (ImageSamplerType *_arg)
virtual void SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)
virtual void SetMovingImageLimiter (MovingImageLimiterType *_arg)
virtual void SetMovingLimitRangeRatio (double _arg)
void SetRandomVariateGenerator (Statistics::MersenneTwisterRandomVariateGenerator &randomVariateGenerator)
virtual void SetRequiredRatioOfValidSamples (double _arg)
virtual void SetScaleGradientWithRespectToMovingImageOrientation (bool _arg)
virtual void SetTransform (AdvancedTransformType *arg)
virtual void SetUseMetricSingleThreaded (bool _arg)
virtual void SetUseMovingImageDerivativeScales (bool _arg)
virtual void SetUseMultiThread (bool _arg)
virtual void UseMetricSingleThreadedOff ()
virtual void UseMetricSingleThreadedOn ()
virtual void UseMultiThreadOff ()
virtual void UseMultiThreadOn ()

Static Public Member Functions

static Pointer New ()

Protected Member Functions

 KNNGraphAlphaMutualInformationImageToImageMetric ()
void PrintSelf (std::ostream &os, Indent indent) const override
 ~KNNGraphAlphaMutualInformationImageToImageMetric () override=default
Protected Member Functions inherited from itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >
virtual void CheckForBSplineInterpolators ()
bool EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const override
void InitializeImageSampler () override
bool IsInsideMovingMask (const MovingImagePointType &mappedPoint) const override
 MultiInputImageToImageMetricBase ()=default
 ~MultiInputImageToImageMetricBase () override=default
Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
 AdvancedImageToImageMetric ()
virtual void AfterThreadedGetValue (MeasureType &) const
virtual void AfterThreadedGetValueAndDerivative (MeasureType &, DerivativeType &) const
void CheckForAdvancedTransform ()
void CheckForBSplineInterpolator ()
void CheckForBSplineTransform () const
void CheckNumberOfSamples () const
bool EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
virtual void EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const
bool FastEvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient, const ThreadIdType threadId) const
Statistics::MersenneTwisterRandomVariateGenerator & GetMutableRandomVariateGenerator () const
Statistics::MersenneTwisterRandomVariateGenerator & GetRandomVariateGenerator ()
void InitializeLimiters ()
virtual void InitializeThreadingParameters () const
 itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct)
 itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct)
void LaunchGetValueAndDerivativeThreaderCallback () const
void LaunchGetValueThreaderCallback () const
void PrintSelf (std::ostream &os, Indent indent) const override
void SetFixedImageMask (const typename Superclass::FixedImageMaskType *) final
void SetFixedImageMask (typename Superclass::FixedImageMaskType *) final
void SetMovingImageMask (const typename Superclass::MovingImageMaskType *) final
void SetMovingImageMask (typename Superclass::MovingImageMaskType *) final
virtual void SetUseFixedImageLimiter (bool _arg)
virtual void SetUseImageSampler (bool _arg)
virtual void SetUseMovingImageLimiter (bool _arg)
virtual void ThreadedGetValue (ThreadIdType) const
virtual void ThreadedGetValueAndDerivative (ThreadIdType) const
MovingImagePointType TransformPoint (const FixedImagePointType &fixedImagePoint) const
 ~AdvancedImageToImageMetric () override=default

Protected Attributes

double m_Alpha { 0.99 }
double m_AvoidDivisionBy { 1e-10 }
BinaryKNNTreePointer m_BinaryKNNTreeFixed { nullptr }
BinaryKNNTreePointer m_BinaryKNNTreeJoint { nullptr }
BinaryKNNTreePointer m_BinaryKNNTreeMoving { nullptr }
BinaryKNNTreeSearchPointer m_BinaryKNNTreeSearcherFixed { nullptr }
BinaryKNNTreeSearchPointer m_BinaryKNNTreeSearcherJoint { nullptr }
BinaryKNNTreeSearchPointer m_BinaryKNNTreeSearcherMoving { nullptr }
Protected Attributes inherited from itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >
BSplineInterpolatorVectorType m_BSplineInterpolatorVector {}
FixedImageInterpolatorVectorType m_FixedImageInterpolatorVector {}
FixedImageMaskVectorType m_FixedImageMaskVector {}
FixedImageRegionVectorType m_FixedImageRegionVector {}
FixedImageVectorType m_FixedImageVector {}
bool m_InterpolatorsAreBSpline { false }
InterpolatorVectorType m_InterpolatorVector {}
MovingImageMaskVectorType m_MovingImageMaskVector {}
MovingImageVectorType m_MovingImageVector {}
Protected Attributes inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
AdvancedTransformType::Pointer m_AdvancedTransform { nullptr }
FixedImageLimiterOutputType m_FixedImageMaxLimit { 1 }
FixedImageLimiterOutputType m_FixedImageMinLimit { 0 }
FixedImagePixelType m_FixedImageTrueMax { 1 }
FixedImagePixelType m_FixedImageTrueMin { 0 }
double m_FixedLimitRangeRatio { 0.01 }
std::unique_ptr< AlignedGetValueAndDerivativePerThreadStruct[]> m_GetValueAndDerivativePerThreadVariables
ThreadIdType m_GetValueAndDerivativePerThreadVariablesSize { 0 }
ImageSamplerPointer m_ImageSampler { nullptr }
MovingImageLimiterOutputType m_MovingImageMaxLimit { 1 }
MovingImageLimiterOutputType m_MovingImageMinLimit { 0 }
MovingImagePixelType m_MovingImageTrueMax { 1 }
MovingImagePixelType m_MovingImageTrueMin { 0 }
double m_MovingLimitRangeRatio { 0.01 }
MultiThreaderParameterType m_ThreaderMetricParameters {}
bool m_TransformIsBSpline { false }
bool m_UseMetricSingleThreaded { true }
bool m_UseMultiThread { false }

Private Types

using MovingImageContinuousIndexType
using MovingImageDerivativeType
using MovingImagePointType
using SpatialDerivativeContainerType = std::vector<SpatialDerivativeType>
using SpatialDerivativeType = vnl_matrix<double>
using TransformJacobianContainerType = std::vector<TransformJacobianType>
using TransformJacobianIndicesContainerType = std::vector<NonZeroJacobianIndicesType>

Private Member Functions

void ComputeListSampleValuesAndDerivativePlusJacobian (const ListSamplePointer &listSampleFixed, const ListSamplePointer &listSampleMoving, const ListSamplePointer &listSampleJoint, const bool doDerivative, TransformJacobianContainerType &jacobians, TransformJacobianIndicesContainerType &jacobiansIndices, SpatialDerivativeContainerType &spatialDerivatives) const
virtual void EvaluateMovingFeatureImageDerivatives (const MovingImagePointType &mappedPoint, SpatialDerivativeType &featureGradients) const
virtual void UpdateDerivativeOfGammas (const SpatialDerivativeType &D1sparse, const SpatialDerivativeType &D2sparse_M, const SpatialDerivativeType &D2sparse_J, const NonZeroJacobianIndicesType &D1indices, const NonZeroJacobianIndicesType &D2indices_M, const NonZeroJacobianIndicesType &D2indices_J, const MeasurementVectorType &diff_M, const MeasurementVectorType &diff_J, const MeasureType &distance_M, const MeasureType &distance_J, DerivativeType &dGamma_M, DerivativeType &dGamma_J) const

Additional Inherited Members

Protected Types inherited from itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >
using BSplineInterpolatorPointer = typename BSplineInterpolatorType::Pointer
using BSplineInterpolatorType
using BSplineInterpolatorVectorType = std::vector<BSplineInterpolatorPointer>
using MovingImageContinuousIndexType
using MovingImageDerivativeType
using MovingImageIndexType
using MovingImagePointType
Protected Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
using BSplineInterpolatorFloatPointer = typename BSplineInterpolatorFloatType::Pointer
using BSplineInterpolatorFloatType
using BSplineInterpolatorPointer = typename BSplineInterpolatorType::Pointer
using BSplineInterpolatorType
using FixedImageIndexType = typename FixedImageType::IndexType
using FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType
using FixedImagePointType = typename TransformType::InputPointType
using LinearInterpolatorPointer = typename LinearInterpolatorType::Pointer
using LinearInterpolatorType = AdvancedLinearInterpolateImageFunction<MovingImageType, CoordinateRepresentationType>
using MovingImageContinuousIndexType = typename InterpolatorType::ContinuousIndexType
using MovingImageDerivativeType = typename BSplineInterpolatorType::CovariantVectorType
using MovingImageIndexType = typename MovingImageType::IndexType
using MovingImagePointType = typename TransformType::OutputPointType
using NonZeroJacobianIndicesType = typename AdvancedTransformType::NonZeroJacobianIndicesType
using ReducedBSplineInterpolatorPointer = typename ReducedBSplineInterpolatorType::Pointer
using ReducedBSplineInterpolatorType
Static Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION AccumulateDerivativesThreaderCallback (void *arg)
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION GetValueAndDerivativeThreaderCallback (void *arg)
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION GetValueThreaderCallback (void *arg)

Member Typedef Documentation

◆ ANNbdTreeType

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ANNbdTreeType = ANNbdTree<ListSampleType>

◆ ANNBruteForceTreeType

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ANNBruteForceTreeType = ANNBruteForceTree<ListSampleType>

◆ ANNFixedRadiusTreeSearchType

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ANNFixedRadiusTreeSearchType = ANNFixedRadiusTreeSearch<ListSampleType>

◆ ANNkDTreeType

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ANNkDTreeType = ANNkDTree<ListSampleType>

◆ ANNPriorityTreeSearchType

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ANNPriorityTreeSearchType = ANNPriorityTreeSearch<ListSampleType>

◆ ANNStandardTreeSearchType

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ANNStandardTreeSearchType = ANNStandardTreeSearch<ListSampleType>

◆ BinaryKNNTreePointer

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::BinaryKNNTreePointer = typename BinaryKNNTreeType::Pointer

◆ BinaryKNNTreeSearchPointer

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::BinaryKNNTreeSearchPointer = typename BinaryKNNTreeSearchType::Pointer

◆ BinaryKNNTreeSearchType

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::BinaryKNNTreeSearchType = BinaryTreeSearchBase<ListSampleType>

Typedefs for tree searchers.

Definition at line 157 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

◆ BinaryKNNTreeType

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::BinaryKNNTreeType = BinaryTreeBase<ListSampleType>

Typedefs for trees.

Definition at line 150 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

◆ ConstPointer

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ConstPointer = SmartPointer<const Self>

◆ DistanceArrayType

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::DistanceArrayType = typename BinaryKNNTreeSearchType::DistanceArrayType

◆ FixedImageInterpolatorVectorType

template<typename TFixedImage, typename TMovingImage>
using itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >::FixedImageInterpolatorVectorType

Definition at line 110 of file itkMultiInputImageToImageMetricBase.h.

◆ FixedImageMaskPointer

template<typename TFixedImage, typename TMovingImage>
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskPointer

Definition at line 91 of file itkAdvancedImageToImageMetric.h.

◆ FixedImageMaskType

template<typename TFixedImage, typename TMovingImage>
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskType

Definition at line 90 of file itkAdvancedImageToImageMetric.h.

◆ FixedImageMaskVectorType

template<typename TFixedImage, typename TMovingImage>
using itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >::FixedImageMaskVectorType

Definition at line 105 of file itkMultiInputImageToImageMetricBase.h.

◆ FixedImageRegionVectorType

template<typename TFixedImage, typename TMovingImage>
using itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >::FixedImageRegionVectorType

Definition at line 106 of file itkMultiInputImageToImageMetricBase.h.

◆ FixedImageVectorType

template<typename TFixedImage, typename TMovingImage>
using itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >::FixedImageVectorType

Typedef's for storing multiple inputs.

Definition at line 104 of file itkMultiInputImageToImageMetricBase.h.

◆ IndexArrayType

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::IndexArrayType = typename BinaryKNNTreeSearchType::IndexArrayType

◆ InterpolatorVectorType

template<typename TFixedImage, typename TMovingImage>
using itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >::InterpolatorVectorType

Definition at line 109 of file itkMultiInputImageToImageMetricBase.h.

◆ ListSamplePointer

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ListSamplePointer = typename ListSampleType::Pointer

◆ ListSampleType

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ListSampleType = typename Statistics::ListSampleCArray<MeasurementVectorType, double>

◆ MeasurementVectorType

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MeasurementVectorType = Array<double>

Typedefs for the samples.

Definition at line 144 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

◆ MeasurementVectorValueType

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MeasurementVectorValueType = typename MeasurementVectorType::ValueType

◆ MovingImageContinuousIndexType

template<typename TFixedImage, typename TMovingImage>
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageContinuousIndexType
private

Definition at line 367 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageDerivativeType

template<typename TFixedImage, typename TMovingImage>
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageDerivativeType
private

Definition at line 366 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageMaskPointer

template<typename TFixedImage, typename TMovingImage>
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskPointer

Definition at line 94 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageMaskType

template<typename TFixedImage, typename TMovingImage>
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskType

Definition at line 93 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageMaskVectorType

template<typename TFixedImage, typename TMovingImage>
using itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >::MovingImageMaskVectorType

Definition at line 108 of file itkMultiInputImageToImageMetricBase.h.

◆ MovingImagePointType

template<typename TFixedImage, typename TMovingImage>
using itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePointType
private

Definition at line 364 of file itkAdvancedImageToImageMetric.h.

◆ MovingImageVectorType

template<typename TFixedImage, typename TMovingImage>
using itk::MultiInputImageToImageMetricBase< TFixedImage, TMovingImage >::MovingImageVectorType

Definition at line 107 of file itkMultiInputImageToImageMetricBase.h.

◆ Pointer

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Pointer = SmartPointer<Self>

◆ Self

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Self = KNNGraphAlphaMutualInformationImageToImageMetric

Standard itk.

Definition at line 81 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

◆ SpatialDerivativeContainerType

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SpatialDerivativeContainerType = std::vector<SpatialDerivativeType>
private

◆ SpatialDerivativeType

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SpatialDerivativeType = vnl_matrix<double>
private

◆ Superclass

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Superclass = MultiInputImageToImageMetricBase<TFixedImage, TMovingImage>

◆ TransformJacobianContainerType

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianContainerType = std::vector<TransformJacobianType>
private

◆ TransformJacobianIndicesContainerType

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianIndicesContainerType = std::vector<NonZeroJacobianIndicesType>
private

◆ TransformJacobianValueType

template<typename TFixedImage, typename TMovingImage>
using itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianValueType = typename TransformJacobianType::ValueType

Constructor & Destructor Documentation

◆ KNNGraphAlphaMutualInformationImageToImageMetric()

template<typename TFixedImage, typename TMovingImage>
itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::KNNGraphAlphaMutualInformationImageToImageMetric ( )
protected

Constructor.

◆ ~KNNGraphAlphaMutualInformationImageToImageMetric()

template<typename TFixedImage, typename TMovingImage>
itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::~KNNGraphAlphaMutualInformationImageToImageMetric ( )
overrideprotecteddefault

Destructor.

Member Function Documentation

◆ ComputeListSampleValuesAndDerivativePlusJacobian()

template<typename TFixedImage, typename TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ComputeListSampleValuesAndDerivativePlusJacobian ( const ListSamplePointer & listSampleFixed,
const ListSamplePointer & listSampleMoving,
const ListSamplePointer & listSampleJoint,
const bool doDerivative,
TransformJacobianContainerType & jacobians,
TransformJacobianIndicesContainerType & jacobiansIndices,
SpatialDerivativeContainerType & spatialDerivatives ) const
private

This function takes the fixed image samples from the ImageSampler and puts them in the listSampleFixed, together with the fixed feature image samples. Also the corresponding moving image values and moving feature values are computed and put into listSampleMoving. The concatenation is put into listSampleJoint. If desired, i.e. if doDerivative is true, then also things needed to compute the derivative of the cost function to the transform parameters are computed:

  • The sparse Jacobian of the transformation (dT/dmu).
  • The spatial derivatives of the moving (feature) images (dm/dx).

◆ EvaluateMovingFeatureImageDerivatives()

template<typename TFixedImage, typename TMovingImage>
virtual void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::EvaluateMovingFeatureImageDerivatives ( const MovingImagePointType & mappedPoint,
SpatialDerivativeType & featureGradients ) const
privatevirtual

This function calculates the spatial derivative of the featureNr feature image at the point mappedPoint.

Todo
move this to base class.

◆ GetAlpha()

template<typename TFixedImage, typename TMovingImage>
virtual const double & itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetAlpha ( )
virtual

Get alpha from alpha - mutual information.

◆ GetAvoidDivisionBy()

template<typename TFixedImage, typename TMovingImage>
virtual const double & itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetAvoidDivisionBy ( )
virtual

Avoid division by a small number.

◆ GetDerivative()

template<typename TFixedImage, typename TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetDerivative ( const ParametersType & parameters,
DerivativeType & Derivative ) const
override

Get the derivatives of the match measure.

◆ GetValue()

template<typename TFixedImage, typename TMovingImage>
MeasureType itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValue ( const ParametersType & parameters) const
override

Get the value for single valued optimizers.

◆ GetValueAndDerivative()

template<typename TFixedImage, typename TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivative ( const ParametersType & parameters,
MeasureType & Value,
DerivativeType & Derivative ) const
override

Get value and derivatives for multiple valued optimizers.

◆ Initialize()

template<typename TFixedImage, typename TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Initialize ( )
override

*** Standard metric stuff: *** Initialize the metric.

◆ ITK_DISALLOW_COPY_AND_MOVE()

template<typename TFixedImage, typename TMovingImage>
itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ITK_DISALLOW_COPY_AND_MOVE ( KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage > )

◆ itkOverrideGetNameOfClassMacro()

template<typename TFixedImage, typename TMovingImage>
itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::itkOverrideGetNameOfClassMacro ( KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage > )

Run-time type information (and related methods).

◆ itkStaticConstMacro() [1/2]

template<typename TFixedImage, typename TMovingImage>
itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro ( FixedImageDimension ,
unsigned int ,
FixedImageType::ImageDimension  )

The fixed image dimension.

◆ itkStaticConstMacro() [2/2]

template<typename TFixedImage, typename TMovingImage>
itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro ( MovingImageDimension ,
unsigned int ,
MovingImageType::ImageDimension  )

◆ New()

template<typename TFixedImage, typename TMovingImage>
Pointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::New ( )
static

Method for creation through the object factory.

◆ PrintSelf()

template<typename TFixedImage, typename TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::PrintSelf ( std::ostream & os,
Indent indent ) const
overrideprotected

PrintSelf.

◆ SetAlpha()

template<typename TFixedImage, typename TMovingImage>
virtual void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetAlpha ( double _arg)
virtual

Set alpha from alpha - mutual information.

◆ SetANNbdTree() [1/2]

template<typename TFixedImage, typename TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNbdTree ( unsigned int bucketSize,
std::string splittingRule,
std::string shrinkingRule )

Set ANNbdTree.

◆ SetANNbdTree() [2/2]

template<typename TFixedImage, typename TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNbdTree ( unsigned int bucketSize,
std::string splittingRuleFixed,
std::string splittingRuleMoving,
std::string splittingRuleJoint,
std::string shrinkingRuleFixed,
std::string shrinkingRuleMoving,
std::string shrinkingRuleJoint )

Set ANNbdTree.

◆ SetANNBruteForceTree()

template<typename TFixedImage, typename TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNBruteForceTree ( )

◆ SetANNFixedRadiusTreeSearch()

template<typename TFixedImage, typename TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNFixedRadiusTreeSearch ( unsigned int kNearestNeighbors,
double errorBound,
double squaredRadius )

◆ SetANNkDTree() [1/2]

template<typename TFixedImage, typename TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNkDTree ( unsigned int bucketSize,
std::string splittingRule )

*** Set trees: *** Currently kd, bd, and brute force trees are supported. Set ANNkDTree.

◆ SetANNkDTree() [2/2]

template<typename TFixedImage, typename TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNkDTree ( unsigned int bucketSize,
std::string splittingRuleFixed,
std::string splittingRuleMoving,
std::string splittingRuleJoint )

Set ANNkDTree.

◆ SetANNPriorityTreeSearch()

template<typename TFixedImage, typename TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNPriorityTreeSearch ( unsigned int kNearestNeighbors,
double errorBound )

◆ SetANNStandardTreeSearch()

template<typename TFixedImage, typename TMovingImage>
void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetANNStandardTreeSearch ( unsigned int kNearestNeighbors,
double errorBound )

*** Set tree searchers: *** Currently standard, fixed radius, and priority tree searchers are supported. Set ANNStandardTreeSearch.

◆ SetAvoidDivisionBy()

template<typename TFixedImage, typename TMovingImage>
virtual void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetAvoidDivisionBy ( double _arg)
virtual

Avoid division by a small number.

◆ UpdateDerivativeOfGammas()

template<typename TFixedImage, typename TMovingImage>
virtual void itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::UpdateDerivativeOfGammas ( const SpatialDerivativeType & D1sparse,
const SpatialDerivativeType & D2sparse_M,
const SpatialDerivativeType & D2sparse_J,
const NonZeroJacobianIndicesType & D1indices,
const NonZeroJacobianIndicesType & D2indices_M,
const NonZeroJacobianIndicesType & D2indices_J,
const MeasurementVectorType & diff_M,
const MeasurementVectorType & diff_J,
const MeasureType & distance_M,
const MeasureType & distance_J,
DerivativeType & dGamma_M,
DerivativeType & dGamma_J ) const
privatevirtual

This function essentially computes D1 - D2, but also takes care of going from a sparse matrix (hence the indices) to a full sized matrix.

Member Data Documentation

◆ m_Alpha

template<typename TFixedImage, typename TMovingImage>
double itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_Alpha { 0.99 }
protected

◆ m_AvoidDivisionBy

template<typename TFixedImage, typename TMovingImage>
double itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_AvoidDivisionBy { 1e-10 }
protected

◆ m_BinaryKNNTreeFixed

template<typename TFixedImage, typename TMovingImage>
BinaryKNNTreePointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_BinaryKNNTreeFixed { nullptr }
protected

Member variables.

Definition at line 266 of file itkKNNGraphAlphaMutualInformationImageToImageMetric.h.

◆ m_BinaryKNNTreeJoint

template<typename TFixedImage, typename TMovingImage>
BinaryKNNTreePointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_BinaryKNNTreeJoint { nullptr }
protected

◆ m_BinaryKNNTreeMoving

template<typename TFixedImage, typename TMovingImage>
BinaryKNNTreePointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_BinaryKNNTreeMoving { nullptr }
protected

◆ m_BinaryKNNTreeSearcherFixed

template<typename TFixedImage, typename TMovingImage>
BinaryKNNTreeSearchPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_BinaryKNNTreeSearcherFixed { nullptr }
protected

◆ m_BinaryKNNTreeSearcherJoint

template<typename TFixedImage, typename TMovingImage>
BinaryKNNTreeSearchPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_BinaryKNNTreeSearcherJoint { nullptr }
protected

◆ m_BinaryKNNTreeSearcherMoving

template<typename TFixedImage, typename TMovingImage>
BinaryKNNTreeSearchPointer itk::KNNGraphAlphaMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_BinaryKNNTreeSearcherMoving { nullptr }
protected


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