#include <elxTransformBendingEnergyPenaltyTerm.h>

Detailed Description

template<class TElastix>
class elastix::TransformBendingEnergyPenalty< TElastix >

A penalty term based on the bending energy of a thin metal sheet.

[1]: D. Rueckert, L. I. Sonoda, C. Hayes, D. L. G. Hill, M. O. Leach, and D. J. Hawkes, "Nonrigid registration using free-form deformations: Application to breast MR images", IEEE Trans. Med. Imaging 18, 712-721, 1999.
[2]: M. Staring and S. Klein, "Itk::Transforms supporting spatial derivatives"", Insight Journal, http://hdl.handle.net/10380/3215. The parameters used in this class are:

Parameters: Metric: Select this metric as follows:
(Metric "TransformBendingEnergyPenalty")

Definition at line 48 of file elxTransformBendingEnergyPenaltyTerm.h.

Inheritance diagram for elastix::TransformBendingEnergyPenalty< TElastix >:

[legend]

Public Types
using	ConstPointer = itk::SmartPointer<const Self>

using	ITKBaseType = typename Superclass2::ITKBaseType

using	Pointer = itk::SmartPointer<Self>

using	Self = TransformBendingEnergyPenalty

using	Superclass1 = itk::TransformBendingEnergyPenaltyTerm<typename MetricBase<TElastix>::FixedImageType, double>

using	Superclass2 = MetricBase<TElastix>

Public Types inherited from itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >
using	ConstPointer = SmartPointer<const Self>

using	Pointer = SmartPointer<Self>

using	Self = TransformBendingEnergyPenaltyTerm

using	Superclass = TransformPenaltyTerm<TFixedImage, TScalarType>

Public Types inherited from itk::TransformPenaltyTerm< TFixedImage, TScalarType >
using	ConstPointer

using	InternalMatrixType

using	JacobianOfSpatialHessianType

using	JacobianOfSpatialJacobianType

using	Pointer

using	ScalarType

using	Self

using	SpatialHessianType

using	SpatialJacobianType

using	Superclass

using	TransformType

Public Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
using	AdvancedTransformType

using	BSplineOrder1TransformPointer

using	BSplineOrder1TransformType

using	BSplineOrder2TransformPointer

using	BSplineOrder2TransformType

using	BSplineOrder3TransformPointer

using	BSplineOrder3TransformType

using	CombinationTransformType

using	ConstPointer

using	DerivativeValueType

using	FixedImageLimiterOutputType

using	FixedImageLimiterPointer

using	FixedImageLimiterType

using	FixedImageMaskConstPointer

using	FixedImageMaskPointer

using	FixedImageMaskType

using	FixedImagePixelType

using	FixedImagePointer

using	ImageSampleContainerPointer

using	ImageSampleContainerType

using	ImageSamplerPointer

using	ImageSamplerType

using	MovingImageDerivativeScalesType

using	MovingImageLimiterOutputType

using	MovingImageLimiterPointer

using	MovingImageLimiterType

using	MovingImageMaskConstPointer

using	MovingImageMaskPointer

using	MovingImageMaskType

using	MovingImagePointer

using	MovingImageRegionType

using	NumberOfParametersType

using	Pointer

using	ScalarType

using	Self

using	Superclass

using	ThreadInfoType

Public Types inherited from elastix::MetricBase< TElastix >
using	AdvancedMetricType = itk::AdvancedImageToImageMetric<FixedImageType, MovingImageType>

using	CoordinateRepresentationType = typename ITKBaseType::ParametersValueType

using	ElastixType

using	FixedImageType = typename ElastixType::FixedImageType

using	FixedPointSetType

using	FixedPointType = typename FixedImageType::PointType

using	FixedPointValueType = typename FixedPointType::ValueType

using	ImageSamplerBaseType = typename AdvancedMetricType::ImageSamplerType

using	ITKBaseType = itk::SingleValuedCostFunction

using	MeasureType = typename ITKBaseType::MeasureType

using	MovingImageDerivativeScalesType = typename AdvancedMetricType::MovingImageDerivativeScalesType

using	MovingImageType = typename ElastixType::MovingImageType

using	MovingPointSetType

using	MovingPointType = typename MovingImageType::PointType

using	MovingPointValueType = typename MovingPointType::ValueType

using	RegistrationType

using	Self = MetricBase

using	Superclass = BaseComponentSE<TElastix>

Public Types inherited from elastix::BaseComponentSE< TElastix >
using	ElastixType = TElastix

using	RegistrationType = typename ElastixType::RegistrationBaseType

using	Self = BaseComponentSE

using	Superclass = BaseComponent

Public Member Functions
	elxClassNameMacro ("TransformBendingEnergyPenalty")

virtual const char *	GetClassName () const

void	Initialize () override

	ITK_DISALLOW_COPY_AND_MOVE (TransformBendingEnergyPenalty)

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

Public Member Functions inherited from itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >
void	AfterThreadedGetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const override

void	GetDerivative (const ParametersType &parameters, DerivativeType &derivative) const override

MeasureType	GetValue (const ParametersType &parameters) const override

void	GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const override

virtual void	GetValueAndDerivativeSingleThreaded (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const

	ITK_DISALLOW_COPY_AND_MOVE (TransformBendingEnergyPenaltyTerm)

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

void	ThreadedGetValueAndDerivative (ThreadIdType threadID) const override

Public Member Functions inherited from itk::TransformPenaltyTerm< TFixedImage, TScalarType >
	ITK_DISALLOW_COPY_AND_MOVE (TransformPenaltyTerm)

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

Public Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
virtual void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const

virtual const FixedImageLimiterType *	GetFixedImageLimiter ()

const FixedImageMaskType *	GetFixedImageMask () const override

virtual double	GetFixedLimitRangeRatio () const

ImageSamplerType *	GetImageSampler () const

virtual const MovingImageDerivativeScalesType &	GetMovingImageDerivativeScales ()

virtual const MovingImageLimiterType *	GetMovingImageLimiter ()

const MovingImageMaskType *	GetMovingImageMask () const override

virtual double	GetMovingLimitRangeRatio () const

virtual double	GetRequiredRatioOfValidSamples () const

virtual bool	GetScaleGradientWithRespectToMovingImageOrientation () const

const AdvancedTransformType *	GetTransform () const override

AdvancedTransformType *	GetTransform () override

virtual bool	GetUseFixedImageLimiter () const

virtual bool	GetUseImageSampler () const

virtual const bool &	GetUseMetricSingleThreaded ()

virtual bool	GetUseMovingImageDerivativeScales () const

virtual bool	GetUseMovingImageLimiter () const

virtual const bool &	GetUseMultiThread ()

void	Initialize () override

	ITK_DISALLOW_COPY_AND_MOVE (AdvancedImageToImageMetric)

	itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, TFixedImage::ImageDimension)

virtual void	SetFixedImageLimiter (FixedImageLimiterType *_arg)

virtual void	SetFixedImageMask (const FixedImageMaskType *const arg)

virtual void	SetFixedLimitRangeRatio (double _arg)

virtual void	SetImageSampler (ImageSamplerType *_arg)

virtual void	SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)

virtual void	SetMovingImageLimiter (MovingImageLimiterType *_arg)

virtual void	SetMovingImageMask (const MovingImageMaskType *const arg)

virtual void	SetMovingLimitRangeRatio (double _arg)

virtual void	SetRequiredRatioOfValidSamples (double _arg)

virtual void	SetScaleGradientWithRespectToMovingImageOrientation (bool _arg)

virtual void	SetTransform (AdvancedTransformType *arg)

virtual void	SetUseMetricSingleThreaded (bool _arg)

virtual void	SetUseMovingImageDerivativeScales (bool _arg)

virtual void	SetUseMultiThread (bool _arg)

virtual void	UseMetricSingleThreadedOff ()

virtual void	UseMetricSingleThreadedOn ()

virtual void	UseMultiThreadOff ()

virtual void	UseMultiThreadOn ()

Public Member Functions inherited from elastix::MetricBase< TElastix >
void	AfterEachIterationBase () override

void	BeforeEachResolutionBase () override

virtual ImageSamplerBaseType *	GetAdvancedMetricImageSampler () const

virtual bool	GetAdvancedMetricUseImageSampler () const

ITKBaseType *	GetAsITKBaseType ()

const ITKBaseType *	GetAsITKBaseType () const

virtual MeasureType	GetCurrentExactMetricValue () const

virtual bool	GetShowExactMetricValue () const

	ITK_DISALLOW_COPY_AND_MOVE (MetricBase)

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

virtual void	SelectNewSamples ()

virtual void	SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)

Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
void	AddTargetCellToIterationInfo (const char *const name)

const Configuration *	GetConfiguration () const

ElastixType *	GetElastix () const

auto &	GetIterationInfoAt (const char *const name)

RegistrationType *	GetRegistration () const

	ITK_DISALLOW_COPY_AND_MOVE (BaseComponentSE)

void	RemoveTargetCellFromIterationInfo (const char *const name)

void	SetConfiguration (const Configuration *_arg)

void	SetElastix (ElastixType *_arg)

Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration ()

virtual void	AfterEachResolution ()

virtual void	AfterEachResolutionBase ()

virtual void	AfterRegistration ()

virtual void	AfterRegistrationBase ()

virtual int	BeforeAll ()

virtual int	BeforeAllBase ()

virtual void	BeforeEachResolution ()

virtual void	BeforeRegistration ()

virtual void	BeforeRegistrationBase ()

virtual const char *	elxGetClassName () const

const char *	GetComponentLabel () const

	ITK_DISALLOW_COPY_AND_MOVE (BaseComponent)

	itkTypeMacroNoParent (BaseComponent)

void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >
static Pointer	New ()

Static Public Member Functions inherited from elastix::BaseComponent
template<typename TBaseComponent >
static auto	AsITKBaseType (TBaseComponent *const baseComponent) -> decltype(baseComponent->GetAsITKBaseType())

static void	InitializeElastixExecutable ()

static bool	IsElastixLibrary ()

Protected Member Functions
	TransformBendingEnergyPenalty ()=default

	~TransformBendingEnergyPenalty () override=default

Protected Member Functions inherited from itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >
	TransformBendingEnergyPenaltyTerm ()

	~TransformBendingEnergyPenaltyTerm () override=default

Protected Member Functions inherited from itk::TransformPenaltyTerm< TFixedImage, TScalarType >
virtual bool	CheckForBSplineTransform2 (BSplineOrder3TransformPointer &bspline) const

	TransformPenaltyTerm ()=default

	~TransformPenaltyTerm () override=default

Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
	AdvancedImageToImageMetric ()

virtual void	AfterThreadedGetValue (MeasureType &) const

void	CheckForAdvancedTransform ()

void	CheckForBSplineInterpolator ()

void	CheckForBSplineTransform () const

void	CheckNumberOfSamples (unsigned long wanted, unsigned long found) const

virtual bool	EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const

bool	EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const

virtual void	EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const

bool	FastEvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient, const ThreadIdType threadId) const

virtual void	InitializeImageSampler ()

void	InitializeLimiters ()

virtual void	InitializeThreadingParameters () const

virtual bool	IsInsideMovingMask (const MovingImagePointType &point) const

	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct)

	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct)

void	LaunchGetValueAndDerivativeThreaderCallback () const

void	LaunchGetValueThreaderCallback () const

void	PrintSelf (std::ostream &os, Indent indent) const override

void	SetFixedImageMask (const typename Superclass::FixedImageMaskType *) final

void	SetFixedImageMask (typename Superclass::FixedImageMaskType *) final

void	SetMovingImageMask (const typename Superclass::MovingImageMaskType *) final

void	SetMovingImageMask (typename Superclass::MovingImageMaskType *) final

virtual void	SetUseFixedImageLimiter (bool _arg)

virtual void	SetUseImageSampler (bool _arg)

virtual void	SetUseMovingImageLimiter (bool _arg)

virtual void	ThreadedGetValue (ThreadIdType) const

MovingImagePointType	TransformPoint (const FixedImagePointType &fixedImagePoint) const

	~AdvancedImageToImageMetric () override=default

Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType	GetExactValue (const ParametersType &parameters)

	MetricBase ()=default

	~MetricBase () override=default

Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()=default

	~BaseComponentSE () override=default

Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()=default

virtual	~BaseComponent ()=default

Private Attributes
	elxOverrideGetSelfMacro

Additional Inherited Members
Protected Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
using	BSplineInterpolatorFloatPointer

using	BSplineInterpolatorFloatType

using	BSplineInterpolatorPointer

using	BSplineInterpolatorType

using	FixedImageIndexType

using	FixedImageIndexValueType

using	FixedImagePointType

using	LinearInterpolatorPointer

using	LinearInterpolatorType

using	MovingImageContinuousIndexType

using	MovingImageDerivativeType

using	MovingImageIndexType

using	MovingImagePointType

using	NonZeroJacobianIndicesType

using	ReducedBSplineInterpolatorPointer

using	ReducedBSplineInterpolatorType

Protected Types inherited from elastix::MetricBase< TElastix >
using	ExactMetricImageSamplerPointer = typename ExactMetricImageSamplerType::Pointer

using	ExactMetricImageSamplerType = itk::ImageGridSampler<FixedImageType>

using	ExactMetricSampleGridSpacingType = typename ExactMetricImageSamplerType::SampleGridSpacingType

using	ParametersType = typename ITKBaseType::ParametersType

Static Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	AccumulateDerivativesThreaderCallback (void *arg)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueAndDerivativeThreaderCallback (void *arg)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueThreaderCallback (void *arg)

Protected Attributes inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
AdvancedTransformType::Pointer	m_AdvancedTransform

FixedImageLimiterOutputType	m_FixedImageMaxLimit

FixedImageLimiterOutputType	m_FixedImageMinLimit

FixedImagePixelType	m_FixedImageTrueMax

FixedImagePixelType	m_FixedImageTrueMin

double	m_FixedLimitRangeRatio

std::unique_ptr< AlignedGetValueAndDerivativePerThreadStruct[]>	m_GetValueAndDerivativePerThreadVariables

ThreadIdType	m_GetValueAndDerivativePerThreadVariablesSize

ImageSamplerPointer	m_ImageSampler

MovingImageLimiterOutputType	m_MovingImageMaxLimit

MovingImageLimiterOutputType	m_MovingImageMinLimit

MovingImagePixelType	m_MovingImageTrueMax

MovingImagePixelType	m_MovingImageTrueMin

double	m_MovingLimitRangeRatio

MultiThreaderParameterType	m_ThreaderMetricParameters

bool	m_TransformIsBSpline

bool	m_UseMetricSingleThreaded

bool	m_UseMultiThread

Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType	m_CurrentExactMetricValue { 0.0 }

unsigned int	m_ExactMetricEachXNumberOfIterations { 1 }

ExactMetricSampleGridSpacingType	m_ExactMetricSampleGridSpacing

ExactMetricImageSamplerPointer	m_ExactMetricSampler { nullptr }

bool	m_ShowExactMetricValue { false }

Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
Configuration::ConstPointer	m_Configuration {}

itk::WeakPointer< TElastix >	m_Elastix {}

RegistrationType *	m_Registration {}

Member Typedef Documentation

◆ ConstPointer

template<class TElastix >

using elastix::TransformBendingEnergyPenalty< TElastix >::ConstPointer = itk::SmartPointer<const Self>

Definition at line 60 of file elxTransformBendingEnergyPenaltyTerm.h.

◆ ITKBaseType

template<class TElastix >

using elastix::TransformBendingEnergyPenalty< TElastix >::ITKBaseType = typename Superclass2::ITKBaseType

Definition at line 121 of file elxTransformBendingEnergyPenaltyTerm.h.

◆ Pointer

template<class TElastix >

using elastix::TransformBendingEnergyPenalty< TElastix >::Pointer = itk::SmartPointer<Self>

Definition at line 59 of file elxTransformBendingEnergyPenaltyTerm.h.

◆ Self

template<class TElastix >

using elastix::TransformBendingEnergyPenalty< TElastix >::Self = TransformBendingEnergyPenalty

Standard ITK-stuff.

Definition at line 56 of file elxTransformBendingEnergyPenaltyTerm.h.

◆ Superclass1

template<class TElastix >

using elastix::TransformBendingEnergyPenalty< TElastix >::Superclass1 = itk::TransformBendingEnergyPenaltyTerm<typename MetricBase<TElastix>::FixedImageType, double>

Definition at line 57 of file elxTransformBendingEnergyPenaltyTerm.h.

◆ Superclass2

template<class TElastix >

using elastix::TransformBendingEnergyPenalty< TElastix >::Superclass2 = MetricBase<TElastix>

Definition at line 58 of file elxTransformBendingEnergyPenaltyTerm.h.

Constructor & Destructor Documentation

◆ TransformBendingEnergyPenalty()

template<class TElastix >

elastix::TransformBendingEnergyPenalty< TElastix >::TransformBendingEnergyPenalty ( )

protecteddefault

The constructor.

◆ ~TransformBendingEnergyPenalty()

template<class TElastix >

elastix::TransformBendingEnergyPenalty< TElastix >::~TransformBendingEnergyPenalty ( )

overrideprotecteddefault

The destructor.

Member Function Documentation

◆ elxClassNameMacro()

template<class TElastix >

elastix::TransformBendingEnergyPenalty< TElastix >::elxClassNameMacro ( "TransformBendingEnergyPenalty< TElastix >" )

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "TransformBendingEnergyPenalty")

◆ GetClassName()

template<class TElastix >

virtual const char * elastix::TransformBendingEnergyPenalty< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >.

◆ Initialize()

template<class TElastix >

void elastix::TransformBendingEnergyPenalty< TElastix >::Initialize ( )

override

Sets up a timer to measure the initialization time and calls the Superclass' implementation.

◆ ITK_DISALLOW_COPY_AND_MOVE()

template<class TElastix >

elastix::TransformBendingEnergyPenalty< TElastix >::ITK_DISALLOW_COPY_AND_MOVE ( TransformBendingEnergyPenalty< TElastix > )

◆ itkStaticConstMacro() [1/2]

template<class TElastix >

elastix::TransformBendingEnergyPenalty< TElastix >::itkStaticConstMacro	(	FixedImageDimension	,
		unsigned int	,
		FixedImageType::ImageDimension	)

The fixed image dimension.

◆ itkStaticConstMacro() [2/2]

template<class TElastix >

elastix::TransformBendingEnergyPenalty< TElastix >::itkStaticConstMacro	(	MovingImageDimension	,
		unsigned int	,
		MovingImageType::ImageDimension	)

The moving image dimension.

◆ New()

template<class TElastix >

static Pointer elastix::TransformBendingEnergyPenalty< TElastix >::New ( )

static

Method for creation through the object factory.

Field Documentation

◆ elxOverrideGetSelfMacro

template<class TElastix >

elastix::TransformBendingEnergyPenalty< TElastix >::elxOverrideGetSelfMacro

private

Definition at line 137 of file elxTransformBendingEnergyPenaltyTerm.h.

Detailed Description

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

◆ ConstPointer

◆ ITKBaseType

◆ Pointer

◆ Self

◆ Superclass1

◆ Superclass2

Constructor & Destructor Documentation

◆ TransformBendingEnergyPenalty()

◆ ~TransformBendingEnergyPenalty()

Member Function Documentation

◆ elxClassNameMacro()

◆ GetClassName()

◆ Initialize()

◆ ITK_DISALLOW_COPY_AND_MOVE()

◆ itkStaticConstMacro() [1/2]

◆ itkStaticConstMacro() [2/2]

◆ New()

Field Documentation

◆ elxOverrideGetSelfMacro