#include <itkTransformPenaltyTerm.h>

Detailed Description

template<class TFixedImage, class TScalarType = double>
class itk::TransformPenaltyTerm< TFixedImage, TScalarType >

A cost function that calculates a penalty term on a transformation.

We decided to make it an itk::ImageToImageMetric, since possibly all the stuff in there is also needed for penalty terms.

A transformation penalty terms has some extra demands on the transform. Therefore, the transformation is required to be of itk::AdvancedTransform type.

Definition at line 45 of file itkTransformPenaltyTerm.h.

Inheritance diagram for itk::TransformPenaltyTerm< TFixedImage, TScalarType >:

[legend]

Public Types
using	ConstPointer = SmartPointer<const Self>

using	InternalMatrixType = typename TransformType::InternalMatrixType

using	JacobianOfSpatialHessianType = typename TransformType::JacobianOfSpatialHessianType

using	JacobianOfSpatialJacobianType = typename TransformType::JacobianOfSpatialJacobianType

using	Pointer = SmartPointer<Self>

using	ScalarType = TScalarType

using	Self = TransformPenaltyTerm

using	SpatialHessianType = typename TransformType::SpatialHessianType

using	SpatialJacobianType = typename TransformType::SpatialJacobianType

using	Superclass = AdvancedImageToImageMetric<TFixedImage, TFixedImage>

using	TransformType = typename Superclass::AdvancedTransformType

Public Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
using	AdvancedTransformType

using	BSplineOrder1TransformPointer

using	BSplineOrder1TransformType

using	BSplineOrder2TransformPointer

using	BSplineOrder2TransformType

using	BSplineOrder3TransformPointer

using	BSplineOrder3TransformType

using	CombinationTransformType

using	ConstPointer

using	DerivativeValueType

using	FixedImageLimiterOutputType

using	FixedImageLimiterPointer

using	FixedImageLimiterType

using	FixedImageMaskConstPointer

using	FixedImageMaskPointer

using	FixedImageMaskType

using	FixedImagePixelType

using	FixedImagePointer

using	ImageSampleContainerPointer

using	ImageSampleContainerType

using	ImageSamplerPointer

using	ImageSamplerType

using	MovingImageDerivativeScalesType

using	MovingImageLimiterOutputType

using	MovingImageLimiterPointer

using	MovingImageLimiterType

using	MovingImageMaskConstPointer

using	MovingImageMaskPointer

using	MovingImageMaskType

using	MovingImagePointer

using	MovingImageRegionType

using	NumberOfParametersType

using	Pointer

using	ScalarType

using	Self

using	Superclass

using	ThreadInfoType

Public Member Functions
virtual const char *	GetClassName () const

	ITK_DISALLOW_COPY_AND_MOVE (TransformPenaltyTerm)

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

Public Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
virtual void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const

virtual const FixedImageLimiterType *	GetFixedImageLimiter ()

const FixedImageMaskType *	GetFixedImageMask () const override

virtual double	GetFixedLimitRangeRatio () const

ImageSamplerType *	GetImageSampler () const

virtual const MovingImageDerivativeScalesType &	GetMovingImageDerivativeScales ()

virtual const MovingImageLimiterType *	GetMovingImageLimiter ()

const MovingImageMaskType *	GetMovingImageMask () const override

virtual double	GetMovingLimitRangeRatio () const

virtual double	GetRequiredRatioOfValidSamples () const

virtual bool	GetScaleGradientWithRespectToMovingImageOrientation () const

const AdvancedTransformType *	GetTransform () const override

AdvancedTransformType *	GetTransform () override

virtual bool	GetUseFixedImageLimiter () const

virtual bool	GetUseImageSampler () const

virtual const bool &	GetUseMetricSingleThreaded ()

virtual bool	GetUseMovingImageDerivativeScales () const

virtual bool	GetUseMovingImageLimiter () const

virtual const bool &	GetUseMultiThread ()

void	Initialize () override

	ITK_DISALLOW_COPY_AND_MOVE (AdvancedImageToImageMetric)

	itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, TFixedImage::ImageDimension)

virtual void	SetFixedImageLimiter (FixedImageLimiterType *_arg)

virtual void	SetFixedImageMask (const FixedImageMaskType *const arg)

virtual void	SetFixedLimitRangeRatio (double _arg)

virtual void	SetImageSampler (ImageSamplerType *_arg)

virtual void	SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)

virtual void	SetMovingImageLimiter (MovingImageLimiterType *_arg)

virtual void	SetMovingImageMask (const MovingImageMaskType *const arg)

virtual void	SetMovingLimitRangeRatio (double _arg)

virtual void	SetRequiredRatioOfValidSamples (double _arg)

virtual void	SetScaleGradientWithRespectToMovingImageOrientation (bool _arg)

virtual void	SetTransform (AdvancedTransformType *arg)

virtual void	SetUseMetricSingleThreaded (bool _arg)

virtual void	SetUseMovingImageDerivativeScales (bool _arg)

virtual void	SetUseMultiThread (bool _arg)

virtual void	UseMetricSingleThreadedOff ()

virtual void	UseMetricSingleThreadedOn ()

virtual void	UseMultiThreadOff ()

virtual void	UseMultiThreadOn ()

Protected Member Functions
virtual bool	CheckForBSplineTransform2 (BSplineOrder3TransformPointer &bspline) const

	TransformPenaltyTerm ()=default

	~TransformPenaltyTerm () override=default

Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
	AdvancedImageToImageMetric ()

virtual void	AfterThreadedGetValue (MeasureType &) const

virtual void	AfterThreadedGetValueAndDerivative (MeasureType &, DerivativeType &) const

void	CheckForAdvancedTransform ()

void	CheckForBSplineInterpolator ()

void	CheckForBSplineTransform () const

void	CheckNumberOfSamples (unsigned long wanted, unsigned long found) const

virtual bool	EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const

bool	EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const

virtual void	EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const

bool	FastEvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient, const ThreadIdType threadId) const

virtual void	InitializeImageSampler ()

void	InitializeLimiters ()

virtual void	InitializeThreadingParameters () const

virtual bool	IsInsideMovingMask (const MovingImagePointType &point) const

	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct)

	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct)

void	LaunchGetValueAndDerivativeThreaderCallback () const

void	LaunchGetValueThreaderCallback () const

void	PrintSelf (std::ostream &os, Indent indent) const override

void	SetFixedImageMask (const typename Superclass::FixedImageMaskType *) final

void	SetFixedImageMask (typename Superclass::FixedImageMaskType *) final

void	SetMovingImageMask (const typename Superclass::MovingImageMaskType *) final

void	SetMovingImageMask (typename Superclass::MovingImageMaskType *) final

virtual void	SetUseFixedImageLimiter (bool _arg)

virtual void	SetUseImageSampler (bool _arg)

virtual void	SetUseMovingImageLimiter (bool _arg)

virtual void	ThreadedGetValue (ThreadIdType) const

virtual void	ThreadedGetValueAndDerivative (ThreadIdType) const

MovingImagePointType	TransformPoint (const FixedImagePointType &fixedImagePoint) const

	~AdvancedImageToImageMetric () override=default

Additional Inherited Members
Protected Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
using	BSplineInterpolatorFloatPointer

using	BSplineInterpolatorFloatType

using	BSplineInterpolatorPointer

using	BSplineInterpolatorType

using	FixedImageIndexType

using	FixedImageIndexValueType

using	FixedImagePointType

using	LinearInterpolatorPointer

using	LinearInterpolatorType

using	MovingImageContinuousIndexType

using	MovingImageDerivativeType

using	MovingImageIndexType

using	MovingImagePointType

using	NonZeroJacobianIndicesType

using	ReducedBSplineInterpolatorPointer

using	ReducedBSplineInterpolatorType

Static Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	AccumulateDerivativesThreaderCallback (void *arg)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueAndDerivativeThreaderCallback (void *arg)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueThreaderCallback (void *arg)

Protected Attributes inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
AdvancedTransformType::Pointer	m_AdvancedTransform

FixedImageLimiterOutputType	m_FixedImageMaxLimit

FixedImageLimiterOutputType	m_FixedImageMinLimit

FixedImagePixelType	m_FixedImageTrueMax

FixedImagePixelType	m_FixedImageTrueMin

double	m_FixedLimitRangeRatio

std::unique_ptr< AlignedGetValueAndDerivativePerThreadStruct[]>	m_GetValueAndDerivativePerThreadVariables

ThreadIdType	m_GetValueAndDerivativePerThreadVariablesSize

ImageSamplerPointer	m_ImageSampler

MovingImageLimiterOutputType	m_MovingImageMaxLimit

MovingImageLimiterOutputType	m_MovingImageMinLimit

MovingImagePixelType	m_MovingImageTrueMax

MovingImagePixelType	m_MovingImageTrueMin

double	m_MovingLimitRangeRatio

MultiThreaderParameterType	m_ThreaderMetricParameters

bool	m_TransformIsBSpline

bool	m_UseMetricSingleThreaded

bool	m_UseMultiThread

Member Typedef Documentation

◆ ConstPointer

template<class TFixedImage , class TScalarType = double>

using itk::TransformPenaltyTerm< TFixedImage, TScalarType >::ConstPointer = SmartPointer<const Self>

Definition at line 54 of file itkTransformPenaltyTerm.h.

◆ InternalMatrixType

template<class TFixedImage , class TScalarType = double>

using itk::TransformPenaltyTerm< TFixedImage, TScalarType >::InternalMatrixType = typename TransformType::InternalMatrixType

Definition at line 113 of file itkTransformPenaltyTerm.h.

◆ JacobianOfSpatialHessianType

template<class TFixedImage , class TScalarType = double>

using itk::TransformPenaltyTerm< TFixedImage, TScalarType >::JacobianOfSpatialHessianType = typename TransformType::JacobianOfSpatialHessianType

Definition at line 112 of file itkTransformPenaltyTerm.h.

◆ JacobianOfSpatialJacobianType

template<class TFixedImage , class TScalarType = double>

using itk::TransformPenaltyTerm< TFixedImage, TScalarType >::JacobianOfSpatialJacobianType = typename TransformType::JacobianOfSpatialJacobianType

Definition at line 110 of file itkTransformPenaltyTerm.h.

◆ Pointer

template<class TFixedImage , class TScalarType = double>

using itk::TransformPenaltyTerm< TFixedImage, TScalarType >::Pointer = SmartPointer<Self>

Definition at line 53 of file itkTransformPenaltyTerm.h.

◆ ScalarType

template<class TFixedImage , class TScalarType = double>

using itk::TransformPenaltyTerm< TFixedImage, TScalarType >::ScalarType = TScalarType

Template parameters. FixedImageType has already been taken from superclass.

Definition at line 105 of file itkTransformPenaltyTerm.h.

◆ Self

template<class TFixedImage , class TScalarType = double>

using itk::TransformPenaltyTerm< TFixedImage, TScalarType >::Self = TransformPenaltyTerm

Standard ITK stuff.

Definition at line 51 of file itkTransformPenaltyTerm.h.

◆ SpatialHessianType

template<class TFixedImage , class TScalarType = double>

using itk::TransformPenaltyTerm< TFixedImage, TScalarType >::SpatialHessianType = typename TransformType::SpatialHessianType

Definition at line 111 of file itkTransformPenaltyTerm.h.

◆ SpatialJacobianType

template<class TFixedImage , class TScalarType = double>

using itk::TransformPenaltyTerm< TFixedImage, TScalarType >::SpatialJacobianType = typename TransformType::SpatialJacobianType

Definition at line 109 of file itkTransformPenaltyTerm.h.

◆ Superclass

template<class TFixedImage , class TScalarType = double>

using itk::TransformPenaltyTerm< TFixedImage, TScalarType >::Superclass = AdvancedImageToImageMetric<TFixedImage, TFixedImage>

Definition at line 52 of file itkTransformPenaltyTerm.h.

◆ TransformType

template<class TFixedImage , class TScalarType = double>

using itk::TransformPenaltyTerm< TFixedImage, TScalarType >::TransformType = typename Superclass::AdvancedTransformType

Typedefs from the AdvancedTransform.

Definition at line 108 of file itkTransformPenaltyTerm.h.

Constructor & Destructor Documentation

◆ TransformPenaltyTerm()

template<class TFixedImage , class TScalarType = double>

itk::TransformPenaltyTerm< TFixedImage, TScalarType >::TransformPenaltyTerm ( )

protecteddefault

The constructor.

◆ ~TransformPenaltyTerm()

template<class TFixedImage , class TScalarType = double>

itk::TransformPenaltyTerm< TFixedImage, TScalarType >::~TransformPenaltyTerm ( )

overrideprotecteddefault

The destructor.

Member Function Documentation

◆ CheckForBSplineTransform2()

template<class TFixedImage , class TScalarType = double>

virtual bool itk::TransformPenaltyTerm< TFixedImage, TScalarType >::CheckForBSplineTransform2 ( BSplineOrder3TransformPointer & bspline ) const

protectedvirtual

A function to check if the transform is B-spline, for speedup.

◆ GetClassName()

template<class TFixedImage , class TScalarType = double>

virtual const char * itk::TransformPenaltyTerm< TFixedImage, TScalarType >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >.

Reimplemented in elastix::DisplacementMagnitudePenalty< TElastix >, elastix::DistancePreservingRigidityPenalty< TElastix >, elastix::TransformBendingEnergyPenalty< TElastix >, elastix::TransformRigidityPenalty< TElastix >, itk::DisplacementMagnitudePenaltyTerm< TFixedImage, TScalarType >, itk::DisplacementMagnitudePenaltyTerm< MetricBase< TElastix >::FixedImageType, double >, itk::DistancePreservingRigidityPenaltyTerm< TFixedImage, TScalarType >, itk::DistancePreservingRigidityPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >, itk::TransformBendingEnergyPenaltyTerm< TFixedImage, TScalarType >, itk::TransformBendingEnergyPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >, itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >, and itk::TransformRigidityPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >.

◆ ITK_DISALLOW_COPY_AND_MOVE()

template<class TFixedImage , class TScalarType = double>

itk::TransformPenaltyTerm< TFixedImage, TScalarType >::ITK_DISALLOW_COPY_AND_MOVE ( TransformPenaltyTerm< TFixedImage, TScalarType > )

◆ itkStaticConstMacro()

template<class TFixedImage , class TScalarType = double>

itk::TransformPenaltyTerm< TFixedImage, TScalarType >::itkStaticConstMacro	(	FixedImageDimension	,
		unsigned int	,
		FixedImageType::ImageDimension	)

Define the dimension.

Detailed Description

Public Types

Public Member Functions

Protected Member Functions

Additional Inherited Members

Member Typedef Documentation

◆ ConstPointer

◆ InternalMatrixType

◆ JacobianOfSpatialHessianType

◆ JacobianOfSpatialJacobianType

◆ Pointer

◆ ScalarType

◆ Self

◆ SpatialHessianType

◆ SpatialJacobianType

◆ Superclass

◆ TransformType

Constructor & Destructor Documentation

◆ TransformPenaltyTerm()

◆ ~TransformPenaltyTerm()

Member Function Documentation

◆ CheckForBSplineTransform2()

◆ GetClassName()

◆ ITK_DISALLOW_COPY_AND_MOVE()

◆ itkStaticConstMacro()