itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType > Class Template Reference

#include <itkTransformRigidityPenaltyTerm.h>

Detailed Description

template<class TFixedImage, class TScalarType>
class itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >

A cost function that calculates a rigidity penalty term.

A cost function that calculates a rigidity penalty term based on the B-spline coefficients of a B-spline transformation. This penalty term is a function of the 1st and 2nd order spatial derivatives of a transformation.

The intended use for this metric is to filter a B-spline coefficient image in order to calculate a rigidity penalty term on a B-spline transform.

The RigidityPenaltyTermValueImageFilter at each pixel location is computed by convolution with some separable 1D kernels.

The rigid penalty term penalizes deviations from a rigid transformation at regions specified by the so-called rigidity images.

This metric only works with B-splines as a transformation model.

References:
[1] M. Staring, S. Klein and J.P.W. Pluim, "A Rigidity Penalty Term for Nonrigid Registration," Medical Physics, vol. 34, no. 11, pp. 4098 - 4108, November 2007.

See also

BSplineTransform

Definition at line 71 of file itkTransformRigidityPenaltyTerm.h.

Inheritance diagram for itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >:

Public Types
using	BSplineTransformPointer = typename BSplineTransformType::Pointer
using	BSplineTransformType = BSplineOrder3TransformType
using	CoefficientImageIteratorType = ImageRegionIterator<CoefficientImageType>
using	CoefficientImagePointer = typename CoefficientImageType::Pointer
using	CoefficientImageSpacingType = typename CoefficientImageType::SpacingType
using	CoefficientImageType = typename BSplineTransformType::ImageType
using	ConstPointer = SmartPointer<const Self>
using	DilateFilterPointer = typename DilateFilterType::Pointer
using	DilateFilterType = GrayscaleDilateImageFilter<RigidityImageType, RigidityImageType, StructuringElementType>
using	GridSpacingType = typename BSplineTransformType::SpacingType
using	NeighborhoodIteratorType = NeighborhoodIterator<CoefficientImageType>
using	NeighborhoodSizeType = typename NeighborhoodType::SizeType
using	NeighborhoodType = Neighborhood<ScalarType, Self::FixedImageDimension>
using	NOIFType = NeighborhoodOperatorImageFilter<CoefficientImageType, CoefficientImageType>
using	Pointer = SmartPointer<Self>
using	RadiusType = typename NeighborhoodIteratorType::RadiusType
using	RigidityImageIndexType = typename RigidityImageType::IndexType
using	RigidityImageIteratorType = ImageRegionIterator<RigidityImageType>
using	RigidityImagePointer = typename RigidityImageType::Pointer
using	RigidityImagePointType = typename RigidityImageType::PointType
using	RigidityImageRegionType = typename RigidityImageType::RegionType
using	RigidityImageType = CoefficientImageType
using	RigidityPixelType = typename RigidityImageType::PixelType
using	Self = TransformRigidityPenaltyTerm
using	SERadiusType = typename StructuringElementType::RadiusType
using	StructuringElementType = BinaryBallStructuringElement<RigidityPixelType, Self::FixedImageDimension>
using	Superclass = TransformPenaltyTerm<TFixedImage, TScalarType>
Public Types inherited from itk::TransformPenaltyTerm< TFixedImage, TScalarType >
using	ConstPointer
using	InternalMatrixType
using	JacobianOfSpatialHessianType
using	JacobianOfSpatialJacobianType
using	Pointer
using	ScalarType
using	Self
using	SpatialHessianType
using	SpatialJacobianType
using	Superclass
using	TransformType
Public Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
using	AdvancedTransformType
using	BSplineOrder1TransformPointer
using	BSplineOrder1TransformType
using	BSplineOrder2TransformPointer
using	BSplineOrder2TransformType
using	BSplineOrder3TransformPointer
using	BSplineOrder3TransformType
using	CombinationTransformType
using	ConstPointer
using	DerivativeValueType
using	FixedImageLimiterOutputType
using	FixedImageLimiterPointer
using	FixedImageLimiterType
using	FixedImageMaskConstPointer
using	FixedImageMaskPointer
using	FixedImageMaskType
using	FixedImagePixelType
using	FixedImagePointer
using	ImageSampleContainerPointer
using	ImageSampleContainerType
using	ImageSamplerPointer
using	ImageSamplerType
using	MovingImageDerivativeScalesType
using	MovingImageLimiterOutputType
using	MovingImageLimiterPointer
using	MovingImageLimiterType
using	MovingImageMaskConstPointer
using	MovingImageMaskPointer
using	MovingImageMaskType
using	MovingImagePointer
using	MovingImageRegionType
using	NumberOfParametersType
using	Pointer
using	ScalarType
using	Self
using	Superclass
using	ThreadInfoType

Public Member Functions
void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const override
void	CheckUseAndCalculationBooleans ()
void	FillRigidityCoefficientImage (const ParametersType &parameters) const
virtual const char *	GetClassName () const
void	GetDerivative (const ParametersType &parameters, DerivativeType &derivative) const override
virtual const MeasureType &	GetLinearityConditionGradientMagnitude ()
virtual const MeasureType &	GetLinearityConditionValue ()
virtual ScalarType	GetLinearityConditionWeight () const
virtual const MeasureType &	GetOrthonormalityConditionGradientMagnitude ()
virtual const MeasureType &	GetOrthonormalityConditionValue ()
virtual ScalarType	GetOrthonormalityConditionWeight () const
virtual const MeasureType &	GetPropernessConditionGradientMagnitude ()
virtual const MeasureType &	GetPropernessConditionValue ()
virtual ScalarType	GetPropernessConditionWeight () const
MeasureType	GetValue (const ParametersType &parameters) const override
void	GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const override
void	Initialize () override
	ITK_DISALLOW_COPY_AND_MOVE (TransformRigidityPenaltyTerm)
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (ImageDimension, unsigned int, FixedImageType::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, FixedImageType::ImageDimension)
virtual void	SetBSplineTransform (BSplineTransformType *_arg)
virtual void	SetCalculateLinearityCondition (bool _arg)
virtual void	SetCalculateOrthonormalityCondition (bool _arg)
virtual void	SetCalculatePropernessCondition (bool _arg)
virtual void	SetDilateRigidityImages (bool _arg)
virtual void	SetDilationRadiusMultiplier (CoordinateRepresentationType _arg)
virtual void	SetFixedRigidityImage (RigidityImageType *_arg)
virtual void	SetLinearityConditionWeight (ScalarType _arg)
virtual void	SetMovingRigidityImage (RigidityImageType *_arg)
virtual void	SetOrthonormalityConditionWeight (ScalarType _arg)
virtual void	SetPropernessConditionWeight (ScalarType _arg)
virtual void	SetUseFixedRigidityImage (bool _arg)
virtual void	SetUseLinearityCondition (bool _arg)
virtual void	SetUseMovingRigidityImage (bool _arg)
virtual void	SetUseOrthonormalityCondition (bool _arg)
virtual void	SetUsePropernessCondition (bool _arg)
Public Member Functions inherited from itk::TransformPenaltyTerm< TFixedImage, TScalarType >
	ITK_DISALLOW_COPY_AND_MOVE (TransformPenaltyTerm)
	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
Public Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
virtual const FixedImageLimiterType *	GetFixedImageLimiter ()
const FixedImageMaskType *	GetFixedImageMask () const override
virtual double	GetFixedLimitRangeRatio () const
ImageSamplerType *	GetImageSampler () const
virtual const MovingImageDerivativeScalesType &	GetMovingImageDerivativeScales ()
virtual const MovingImageLimiterType *	GetMovingImageLimiter ()
const MovingImageMaskType *	GetMovingImageMask () const override
virtual double	GetMovingLimitRangeRatio () const
virtual double	GetRequiredRatioOfValidSamples () const
virtual bool	GetScaleGradientWithRespectToMovingImageOrientation () const
const AdvancedTransformType *	GetTransform () const override
AdvancedTransformType *	GetTransform () override
virtual bool	GetUseFixedImageLimiter () const
virtual bool	GetUseImageSampler () const
virtual const bool &	GetUseMetricSingleThreaded ()
virtual bool	GetUseMovingImageDerivativeScales () const
virtual bool	GetUseMovingImageLimiter () const
virtual const bool &	GetUseMultiThread ()
void	Initialize () override
	ITK_DISALLOW_COPY_AND_MOVE (AdvancedImageToImageMetric)
	itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)
	itkStaticConstMacro (MovingImageDimension, unsigned int, TFixedImage::ImageDimension)
virtual void	SetFixedImageLimiter (FixedImageLimiterType *_arg)
virtual void	SetFixedImageMask (const FixedImageMaskType *const arg)
virtual void	SetFixedLimitRangeRatio (double _arg)
virtual void	SetImageSampler (ImageSamplerType *_arg)
virtual void	SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)
virtual void	SetMovingImageLimiter (MovingImageLimiterType *_arg)
virtual void	SetMovingImageMask (const MovingImageMaskType *const arg)
virtual void	SetMovingLimitRangeRatio (double _arg)
virtual void	SetRequiredRatioOfValidSamples (double _arg)
virtual void	SetScaleGradientWithRespectToMovingImageOrientation (bool _arg)
virtual void	SetTransform (AdvancedTransformType *arg)
virtual void	SetUseMetricSingleThreaded (bool _arg)
virtual void	SetUseMovingImageDerivativeScales (bool _arg)
virtual void	SetUseMultiThread (bool _arg)
virtual void	UseMetricSingleThreadedOff ()
virtual void	UseMetricSingleThreadedOn ()
virtual void	UseMultiThreadOff ()
virtual void	UseMultiThreadOn ()

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
void	PrintSelf (std::ostream &os, Indent indent) const override
	TransformRigidityPenaltyTerm ()
	~TransformRigidityPenaltyTerm () override=default
Protected Member Functions inherited from itk::TransformPenaltyTerm< TFixedImage, TScalarType >
virtual bool	CheckForBSplineTransform2 (BSplineOrder3TransformPointer &bspline) const
	TransformPenaltyTerm ()=default
	~TransformPenaltyTerm () override=default
Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
	AdvancedImageToImageMetric ()
virtual void	AfterThreadedGetValue (MeasureType &) const
virtual void	AfterThreadedGetValueAndDerivative (MeasureType &, DerivativeType &) const
void	CheckForAdvancedTransform ()
void	CheckForBSplineInterpolator ()
void	CheckForBSplineTransform () const
void	CheckNumberOfSamples (unsigned long wanted, unsigned long found) const
virtual bool	EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const
bool	EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
virtual void	EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const
bool	FastEvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient, const ThreadIdType threadId) const
virtual void	InitializeImageSampler ()
void	InitializeLimiters ()
virtual void	InitializeThreadingParameters () const
virtual bool	IsInsideMovingMask (const MovingImagePointType &point) const
	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct)
	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct)
void	LaunchGetValueAndDerivativeThreaderCallback () const
void	LaunchGetValueThreaderCallback () const
void	PrintSelf (std::ostream &os, Indent indent) const override
void	SetFixedImageMask (const typename Superclass::FixedImageMaskType *) final
void	SetFixedImageMask (typename Superclass::FixedImageMaskType *) final
void	SetMovingImageMask (const typename Superclass::MovingImageMaskType *) final
void	SetMovingImageMask (typename Superclass::MovingImageMaskType *) final
virtual void	SetUseFixedImageLimiter (bool _arg)
virtual void	SetUseImageSampler (bool _arg)
virtual void	SetUseMovingImageLimiter (bool _arg)
virtual void	ThreadedGetValue (ThreadIdType) const
virtual void	ThreadedGetValueAndDerivative (ThreadIdType) const
MovingImagePointType	TransformPoint (const FixedImagePointType &fixedImagePoint) const
	~AdvancedImageToImageMetric () override=default

Private Member Functions
void	Create1DOperator (NeighborhoodType &F, const std::string &whichF, const unsigned int WhichDimension, const CoefficientImageSpacingType &spacing) const
void	CreateNDOperator (NeighborhoodType &F, const std::string &whichF, const CoefficientImageSpacingType &spacing) const
virtual void	DilateRigidityImages ()
CoefficientImagePointer	FilterSeparable (const CoefficientImageType *, const std::vector< NeighborhoodType > &Operators) const

Private Attributes
BSplineTransformPointer	m_BSplineTransform {}
bool	m_CalculateLinearityCondition {}
bool	m_CalculateOrthonormalityCondition {}
bool	m_CalculatePropernessCondition {}
bool	m_DilateRigidityImages {}
CoordinateRepresentationType	m_DilationRadiusMultiplier {}
RigidityImagePointer	m_FixedRigidityImage {}
RigidityImagePointer	m_FixedRigidityImageDilated {}
std::vector< DilateFilterPointer >	m_FixedRigidityImageDilation {}
MeasureType	m_LinearityConditionGradientMagnitude {}
MeasureType	m_LinearityConditionValue {}
ScalarType	m_LinearityConditionWeight {}
RigidityImagePointer	m_MovingRigidityImage {}
RigidityImagePointer	m_MovingRigidityImageDilated {}
std::vector< DilateFilterPointer >	m_MovingRigidityImageDilation {}
MeasureType	m_OrthonormalityConditionGradientMagnitude {}
MeasureType	m_OrthonormalityConditionValue {}
ScalarType	m_OrthonormalityConditionWeight {}
MeasureType	m_PropernessConditionGradientMagnitude {}
MeasureType	m_PropernessConditionValue {}
ScalarType	m_PropernessConditionWeight {}
RigidityImagePointer	m_RigidityCoefficientImage {}
bool	m_RigidityCoefficientImageIsFilled {}
MeasureType	m_RigidityPenaltyTermValue {}
bool	m_UseFixedRigidityImage {}
bool	m_UseLinearityCondition {}
bool	m_UseMovingRigidityImage {}
bool	m_UseOrthonormalityCondition {}
bool	m_UsePropernessCondition {}

Additional Inherited Members
Protected Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
using	BSplineInterpolatorFloatPointer
using	BSplineInterpolatorFloatType
using	BSplineInterpolatorPointer
using	BSplineInterpolatorType
using	FixedImageIndexType
using	FixedImageIndexValueType
using	FixedImagePointType
using	LinearInterpolatorPointer
using	LinearInterpolatorType
using	MovingImageContinuousIndexType
using	MovingImageDerivativeType
using	MovingImageIndexType
using	MovingImagePointType
using	NonZeroJacobianIndicesType
using	ReducedBSplineInterpolatorPointer
using	ReducedBSplineInterpolatorType
Static Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	AccumulateDerivativesThreaderCallback (void *arg)
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueAndDerivativeThreaderCallback (void *arg)
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueThreaderCallback (void *arg)
Protected Attributes inherited from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >
AdvancedTransformType::Pointer	m_AdvancedTransform
FixedImageLimiterOutputType	m_FixedImageMaxLimit
FixedImageLimiterOutputType	m_FixedImageMinLimit
FixedImagePixelType	m_FixedImageTrueMax
FixedImagePixelType	m_FixedImageTrueMin
double	m_FixedLimitRangeRatio
std::unique_ptr< AlignedGetValueAndDerivativePerThreadStruct[]>	m_GetValueAndDerivativePerThreadVariables
ThreadIdType	m_GetValueAndDerivativePerThreadVariablesSize
ImageSamplerPointer	m_ImageSampler
MovingImageLimiterOutputType	m_MovingImageMaxLimit
MovingImageLimiterOutputType	m_MovingImageMinLimit
MovingImagePixelType	m_MovingImageTrueMax
MovingImagePixelType	m_MovingImageTrueMin
double	m_MovingLimitRangeRatio
MultiThreaderParameterType	m_ThreaderMetricParameters
bool	m_TransformIsBSpline
bool	m_UseMetricSingleThreaded
bool	m_UseMultiThread

Member Typedef Documentation

BSplineTransformPointer

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::BSplineTransformPointer = typename BSplineTransformType::Pointer

Definition at line 150 of file itkTransformRigidityPenaltyTerm.h.

BSplineTransformType

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::BSplineTransformType = BSplineOrder3TransformType

Typedef's for B-spline transform.

Definition at line 149 of file itkTransformRigidityPenaltyTerm.h.

CoefficientImageIteratorType

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::CoefficientImageIteratorType = ImageRegionIterator<CoefficientImageType>

Definition at line 159 of file itkTransformRigidityPenaltyTerm.h.

CoefficientImagePointer

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::CoefficientImagePointer = typename CoefficientImageType::Pointer

Definition at line 153 of file itkTransformRigidityPenaltyTerm.h.

CoefficientImageSpacingType

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::CoefficientImageSpacingType = typename CoefficientImageType::SpacingType

Definition at line 154 of file itkTransformRigidityPenaltyTerm.h.

CoefficientImageType

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::CoefficientImageType = typename BSplineTransformType::ImageType

Definition at line 152 of file itkTransformRigidityPenaltyTerm.h.

ConstPointer

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::ConstPointer = SmartPointer<const Self>

Definition at line 80 of file itkTransformRigidityPenaltyTerm.h.

DilateFilterPointer

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::DilateFilterPointer = typename DilateFilterType::Pointer

Definition at line 175 of file itkTransformRigidityPenaltyTerm.h.

DilateFilterType

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::DilateFilterType = GrayscaleDilateImageFilter<RigidityImageType, RigidityImageType, StructuringElementType>

Definition at line 174 of file itkTransformRigidityPenaltyTerm.h.

GridSpacingType

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::GridSpacingType = typename BSplineTransformType::SpacingType

Definition at line 151 of file itkTransformRigidityPenaltyTerm.h.

NeighborhoodIteratorType

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::NeighborhoodIteratorType = NeighborhoodIterator<CoefficientImageType>

Definition at line 161 of file itkTransformRigidityPenaltyTerm.h.

NeighborhoodSizeType

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::NeighborhoodSizeType = typename NeighborhoodType::SizeType

Definition at line 158 of file itkTransformRigidityPenaltyTerm.h.

NeighborhoodType

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::NeighborhoodType = Neighborhood<ScalarType, Self::FixedImageDimension>

Typedef support for neighborhoods, filters, etc.

Definition at line 157 of file itkTransformRigidityPenaltyTerm.h.

NOIFType

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::NOIFType = NeighborhoodOperatorImageFilter<CoefficientImageType, CoefficientImageType>

Definition at line 160 of file itkTransformRigidityPenaltyTerm.h.

Pointer

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::Pointer = SmartPointer<Self>

Definition at line 79 of file itkTransformRigidityPenaltyTerm.h.

RadiusType

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::RadiusType = typename NeighborhoodIteratorType::RadiusType

Definition at line 162 of file itkTransformRigidityPenaltyTerm.h.

RigidityImageIndexType

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::RigidityImageIndexType = typename RigidityImageType::IndexType

Definition at line 169 of file itkTransformRigidityPenaltyTerm.h.

RigidityImageIteratorType

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::RigidityImageIteratorType = ImageRegionIterator<RigidityImageType>

Definition at line 171 of file itkTransformRigidityPenaltyTerm.h.

RigidityImagePointer

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::RigidityImagePointer = typename RigidityImageType::Pointer

Definition at line 166 of file itkTransformRigidityPenaltyTerm.h.

RigidityImagePointType

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::RigidityImagePointType = typename RigidityImageType::PointType

Definition at line 170 of file itkTransformRigidityPenaltyTerm.h.

RigidityImageRegionType

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::RigidityImageRegionType = typename RigidityImageType::RegionType

Definition at line 168 of file itkTransformRigidityPenaltyTerm.h.

RigidityImageType

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::RigidityImageType = CoefficientImageType

Typedef's for the construction of the rigidity image.

Definition at line 165 of file itkTransformRigidityPenaltyTerm.h.

RigidityPixelType

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::RigidityPixelType = typename RigidityImageType::PixelType

Definition at line 167 of file itkTransformRigidityPenaltyTerm.h.

Self

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::Self = TransformRigidityPenaltyTerm

Standard itk stuff.

Definition at line 77 of file itkTransformRigidityPenaltyTerm.h.

SERadiusType

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::SERadiusType = typename StructuringElementType::RadiusType

Definition at line 173 of file itkTransformRigidityPenaltyTerm.h.

StructuringElementType

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::StructuringElementType = BinaryBallStructuringElement<RigidityPixelType, Self::FixedImageDimension>

Definition at line 172 of file itkTransformRigidityPenaltyTerm.h.

Superclass

template<class TFixedImage , class TScalarType >

using itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::Superclass = TransformPenaltyTerm<TFixedImage, TScalarType>

Definition at line 78 of file itkTransformRigidityPenaltyTerm.h.

Constructor & Destructor Documentation

TransformRigidityPenaltyTerm()

template<class TFixedImage , class TScalarType >

itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::TransformRigidityPenaltyTerm ( )

protected

The constructor.

~TransformRigidityPenaltyTerm()

template<class TFixedImage , class TScalarType >

itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::~TransformRigidityPenaltyTerm ( )

overrideprotecteddefault

The destructor.

Member Function Documentation

BeforeThreadedGetValueAndDerivative()

template<class TFixedImage , class TScalarType >

void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::BeforeThreadedGetValueAndDerivative ( const TransformParametersType & parameters ) const

overridevirtual

Contains calls from GetValueAndDerivative that are thread-unsafe.

Reimplemented from itk::AdvancedImageToImageMetric< TFixedImage, TFixedImage >.

CheckUseAndCalculationBooleans()

template<class TFixedImage , class TScalarType >

void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::CheckUseAndCalculationBooleans

(

)

Check stuff.

Create1DOperator()

template<class TFixedImage , class TScalarType >

void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::Create1DOperator ( NeighborhoodType & F, const std::string & whichF, const unsigned int WhichDimension, const CoefficientImageSpacingType & spacing ) const

private

Private function used for the filtering. It creates 1D separable operators F.

CreateNDOperator()

template<class TFixedImage , class TScalarType >

void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::CreateNDOperator ( NeighborhoodType & F, const std::string & whichF, const CoefficientImageSpacingType & spacing ) const

private

Private function used for the filtering. It creates ND inseparable operators F.

DilateRigidityImages()

template<class TFixedImage , class TScalarType >

virtual void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::DilateRigidityImages ( )

privatevirtual

Internal function to dilate the rigidity images.

FillRigidityCoefficientImage()

template<class TFixedImage , class TScalarType >

void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::FillRigidityCoefficientImage

(

const ParametersType &

parameters

)

const

Function to fill the RigidityCoefficientImage every iteration.

FilterSeparable()

template<class TFixedImage , class TScalarType >

CoefficientImagePointer itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::FilterSeparable ( const CoefficientImageType * , const std::vector< NeighborhoodType > & Operators ) const

private

Private function used for the filtering. It performs 1D separable filtering.

GetClassName()

template<class TFixedImage , class TScalarType >

virtual const char * itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::TransformPenaltyTerm< TFixedImage, TScalarType >.

Reimplemented in elastix::TransformRigidityPenalty< TElastix >.

GetDerivative()

template<class TFixedImage , class TScalarType >

void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::GetDerivative ( const ParametersType & parameters, DerivativeType & derivative ) const

override

The GetDerivative()-method returns the rigid penalty derivative.

GetLinearityConditionGradientMagnitude()

template<class TFixedImage , class TScalarType >

virtual const MeasureType & itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::GetLinearityConditionGradientMagnitude ( )

virtual

Get the gradient magnitude of the linearity condition.

GetLinearityConditionValue()

template<class TFixedImage , class TScalarType >

virtual const MeasureType & itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::GetLinearityConditionValue ( )

virtual

Get the value of the linearity condition.

GetLinearityConditionWeight()

template<class TFixedImage , class TScalarType >

virtual ScalarType itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::GetLinearityConditionWeight ( ) const

virtual

GetOrthonormalityConditionGradientMagnitude()

template<class TFixedImage , class TScalarType >

virtual const MeasureType & itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::GetOrthonormalityConditionGradientMagnitude ( )

virtual

Get the gradient magnitude of the orthonormality condition.

GetOrthonormalityConditionValue()

template<class TFixedImage , class TScalarType >

virtual const MeasureType & itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::GetOrthonormalityConditionValue ( )

virtual

Get the value of the orthonormality condition.

GetOrthonormalityConditionWeight()

template<class TFixedImage , class TScalarType >

virtual ScalarType itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::GetOrthonormalityConditionWeight ( ) const

virtual

GetPropernessConditionGradientMagnitude()

template<class TFixedImage , class TScalarType >

virtual const MeasureType & itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::GetPropernessConditionGradientMagnitude ( )

virtual

Get the gradient magnitude of the properness condition.

GetPropernessConditionValue()

template<class TFixedImage , class TScalarType >

virtual const MeasureType & itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::GetPropernessConditionValue ( )

virtual

Get the value of the properness condition.

GetPropernessConditionWeight()

template<class TFixedImage , class TScalarType >

virtual ScalarType itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::GetPropernessConditionWeight ( ) const

virtual

GetValue()

template<class TFixedImage , class TScalarType >

MeasureType itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::GetValue ( const ParametersType & parameters ) const

override

The GetValue()-method returns the rigid penalty value.

GetValueAndDerivative()

template<class TFixedImage , class TScalarType >

void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::GetValueAndDerivative ( const ParametersType & parameters, MeasureType & value, DerivativeType & derivative ) const

override

The GetValueAndDerivative()-method returns the rigid penalty value and its derivative.

Initialize()

template<class TFixedImage , class TScalarType >

void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::Initialize ( )

override

Initialize the penalty term.

ITK_DISALLOW_COPY_AND_MOVE()

template<class TFixedImage , class TScalarType >

itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::ITK_DISALLOW_COPY_AND_MOVE

(

TransformRigidityPenaltyTerm< TFixedImage, TScalarType >

)

itkStaticConstMacro() [1/3]

template<class TFixedImage , class TScalarType >

itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::itkStaticConstMacro	(	FixedImageDimension	,
		unsigned int	,
		FixedImageType::ImageDimension	)

Define the dimension.

itkStaticConstMacro() [2/3]

template<class TFixedImage , class TScalarType >

itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::itkStaticConstMacro	(	ImageDimension	,
		unsigned int	,
		FixedImageType::ImageDimension	)

itkStaticConstMacro() [3/3]

template<class TFixedImage , class TScalarType >

itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::itkStaticConstMacro	(	MovingImageDimension	,
		unsigned int	,
		FixedImageType::ImageDimension	)

New()

template<class TFixedImage , class TScalarType >

static Pointer itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::New ( )

static

Method for creation through the object factory.

PrintSelf()

template<class TFixedImage , class TScalarType >

void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::PrintSelf ( std::ostream & os, Indent indent ) const

overrideprotected

PrintSelf.

SetBSplineTransform()

template<class TFixedImage , class TScalarType >

virtual void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::SetBSplineTransform ( BSplineTransformType * _arg )

virtual

Set the B-spline transform in this class. This class expects a BSplineTransform! It is not suited for others.

SetCalculateLinearityCondition()

template<class TFixedImage , class TScalarType >

virtual void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::SetCalculateLinearityCondition ( bool _arg )

virtual

Set the calculation of the linearity condition part, even if we don't use it.

SetCalculateOrthonormalityCondition()

template<class TFixedImage , class TScalarType >

virtual void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::SetCalculateOrthonormalityCondition ( bool _arg )

virtual

Set the calculation of the orthonormality condition part, even if we don't use it.

SetCalculatePropernessCondition()

template<class TFixedImage , class TScalarType >

virtual void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::SetCalculatePropernessCondition ( bool _arg )

virtual

Set the calculation of the properness condition part., even if we don't use it.

SetDilateRigidityImages()

template<class TFixedImage , class TScalarType >

virtual void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::SetDilateRigidityImages ( bool _arg )

virtual

Get the value of the total rigidity penalty term. Set if the RigidityImage's are dilated.

SetDilationRadiusMultiplier()

template<class TFixedImage , class TScalarType >

virtual void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::SetDilationRadiusMultiplier ( CoordinateRepresentationType _arg )

virtual

Set the DilationRadiusMultiplier.

SetFixedRigidityImage()

template<class TFixedImage , class TScalarType >

virtual void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::SetFixedRigidityImage ( RigidityImageType * _arg )

virtual

Set the fixed coefficient image.

SetLinearityConditionWeight()

template<class TFixedImage , class TScalarType >

virtual void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::SetLinearityConditionWeight ( ScalarType _arg )

virtual

Set the RigidityImage in this class. Set/Get the weight of the linearity condition part.

SetMovingRigidityImage()

template<class TFixedImage , class TScalarType >

virtual void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::SetMovingRigidityImage ( RigidityImageType * _arg )

virtual

Set the moving coefficient image.

SetOrthonormalityConditionWeight()

template<class TFixedImage , class TScalarType >

virtual void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::SetOrthonormalityConditionWeight ( ScalarType _arg )

virtual

Set/Get the weight of the orthonormality condition part.

SetPropernessConditionWeight()

template<class TFixedImage , class TScalarType >

virtual void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::SetPropernessConditionWeight ( ScalarType _arg )

virtual

Set/Get the weight of the properness condition part.

SetUseFixedRigidityImage()

template<class TFixedImage , class TScalarType >

virtual void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::SetUseFixedRigidityImage ( bool _arg )

virtual

Set to use the FixedRigidityImage or not.

SetUseLinearityCondition()

template<class TFixedImage , class TScalarType >

virtual void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::SetUseLinearityCondition ( bool _arg )

virtual

Set the usage of the linearity condition part.

SetUseMovingRigidityImage()

template<class TFixedImage , class TScalarType >

virtual void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::SetUseMovingRigidityImage ( bool _arg )

virtual

Set to use the MovingRigidityImage or not.

SetUseOrthonormalityCondition()

template<class TFixedImage , class TScalarType >

virtual void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::SetUseOrthonormalityCondition ( bool _arg )

virtual

Set the usage of the orthonormality condition part.

SetUsePropernessCondition()

template<class TFixedImage , class TScalarType >

virtual void itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::SetUsePropernessCondition ( bool _arg )

virtual

Set the usage of the properness condition part.

Field Documentation

m_BSplineTransform

template<class TFixedImage , class TScalarType >

BSplineTransformPointer itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_BSplineTransform {}

private

Member variables.

Definition at line 320 of file itkTransformRigidityPenaltyTerm.h.

m_CalculateLinearityCondition

template<class TFixedImage , class TScalarType >

bool itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_CalculateLinearityCondition {}

private

Definition at line 336 of file itkTransformRigidityPenaltyTerm.h.

m_CalculateOrthonormalityCondition

template<class TFixedImage , class TScalarType >

bool itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_CalculateOrthonormalityCondition {}

private

Definition at line 337 of file itkTransformRigidityPenaltyTerm.h.

m_CalculatePropernessCondition

template<class TFixedImage , class TScalarType >

bool itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_CalculatePropernessCondition {}

private

Definition at line 338 of file itkTransformRigidityPenaltyTerm.h.

m_DilateRigidityImages

template<class TFixedImage , class TScalarType >

bool itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_DilateRigidityImages {}

private

Definition at line 342 of file itkTransformRigidityPenaltyTerm.h.

m_DilationRadiusMultiplier

template<class TFixedImage , class TScalarType >

CoordinateRepresentationType itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_DilationRadiusMultiplier {}

private

Rigidity image variables.

Definition at line 341 of file itkTransformRigidityPenaltyTerm.h.

m_FixedRigidityImage

template<class TFixedImage , class TScalarType >

RigidityImagePointer itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_FixedRigidityImage {}

private

Definition at line 344 of file itkTransformRigidityPenaltyTerm.h.

m_FixedRigidityImageDilated

template<class TFixedImage , class TScalarType >

RigidityImagePointer itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_FixedRigidityImageDilated {}

private

Definition at line 349 of file itkTransformRigidityPenaltyTerm.h.

m_FixedRigidityImageDilation

template<class TFixedImage , class TScalarType >

std::vector<DilateFilterPointer> itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_FixedRigidityImageDilation {}

private

Definition at line 347 of file itkTransformRigidityPenaltyTerm.h.

m_LinearityConditionGradientMagnitude

template<class TFixedImage , class TScalarType >

MeasureType itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_LinearityConditionGradientMagnitude {}

mutableprivate

Definition at line 329 of file itkTransformRigidityPenaltyTerm.h.

m_LinearityConditionValue

template<class TFixedImage , class TScalarType >

MeasureType itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_LinearityConditionValue {}

mutableprivate

Definition at line 326 of file itkTransformRigidityPenaltyTerm.h.

m_LinearityConditionWeight

template<class TFixedImage , class TScalarType >

ScalarType itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_LinearityConditionWeight {}

private

Definition at line 321 of file itkTransformRigidityPenaltyTerm.h.

m_MovingRigidityImage

template<class TFixedImage , class TScalarType >

RigidityImagePointer itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_MovingRigidityImage {}

private

Definition at line 345 of file itkTransformRigidityPenaltyTerm.h.

m_MovingRigidityImageDilated

template<class TFixedImage , class TScalarType >

RigidityImagePointer itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_MovingRigidityImageDilated {}

private

Definition at line 350 of file itkTransformRigidityPenaltyTerm.h.

m_MovingRigidityImageDilation

template<class TFixedImage , class TScalarType >

std::vector<DilateFilterPointer> itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_MovingRigidityImageDilation {}

private

Definition at line 348 of file itkTransformRigidityPenaltyTerm.h.

m_OrthonormalityConditionGradientMagnitude

template<class TFixedImage , class TScalarType >

MeasureType itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_OrthonormalityConditionGradientMagnitude {}

mutableprivate

Definition at line 330 of file itkTransformRigidityPenaltyTerm.h.

m_OrthonormalityConditionValue

template<class TFixedImage , class TScalarType >

MeasureType itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_OrthonormalityConditionValue {}

mutableprivate

Definition at line 327 of file itkTransformRigidityPenaltyTerm.h.

m_OrthonormalityConditionWeight

template<class TFixedImage , class TScalarType >

ScalarType itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_OrthonormalityConditionWeight {}

private

Definition at line 322 of file itkTransformRigidityPenaltyTerm.h.

m_PropernessConditionGradientMagnitude

template<class TFixedImage , class TScalarType >

MeasureType itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_PropernessConditionGradientMagnitude {}

mutableprivate

Definition at line 331 of file itkTransformRigidityPenaltyTerm.h.

m_PropernessConditionValue

template<class TFixedImage , class TScalarType >

MeasureType itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_PropernessConditionValue {}

mutableprivate

Definition at line 328 of file itkTransformRigidityPenaltyTerm.h.

m_PropernessConditionWeight

template<class TFixedImage , class TScalarType >

ScalarType itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_PropernessConditionWeight {}

private

Definition at line 323 of file itkTransformRigidityPenaltyTerm.h.

m_RigidityCoefficientImage

template<class TFixedImage , class TScalarType >

RigidityImagePointer itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_RigidityCoefficientImage {}

private

Definition at line 346 of file itkTransformRigidityPenaltyTerm.h.

m_RigidityCoefficientImageIsFilled

template<class TFixedImage , class TScalarType >

bool itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_RigidityCoefficientImageIsFilled {}

mutableprivate

Definition at line 343 of file itkTransformRigidityPenaltyTerm.h.

m_RigidityPenaltyTermValue

template<class TFixedImage , class TScalarType >

MeasureType itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_RigidityPenaltyTermValue {}

mutableprivate

Definition at line 325 of file itkTransformRigidityPenaltyTerm.h.

m_UseFixedRigidityImage

template<class TFixedImage , class TScalarType >

bool itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_UseFixedRigidityImage {}

private

Definition at line 351 of file itkTransformRigidityPenaltyTerm.h.

m_UseLinearityCondition

template<class TFixedImage , class TScalarType >

bool itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_UseLinearityCondition {}

private

Definition at line 333 of file itkTransformRigidityPenaltyTerm.h.

m_UseMovingRigidityImage

template<class TFixedImage , class TScalarType >

bool itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_UseMovingRigidityImage {}

private

Definition at line 352 of file itkTransformRigidityPenaltyTerm.h.

m_UseOrthonormalityCondition

template<class TFixedImage , class TScalarType >

bool itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_UseOrthonormalityCondition {}

private

Definition at line 334 of file itkTransformRigidityPenaltyTerm.h.

m_UsePropernessCondition

template<class TFixedImage , class TScalarType >

bool itk::TransformRigidityPenaltyTerm< TFixedImage, TScalarType >::m_UsePropernessCondition {}

private

Definition at line 335 of file itkTransformRigidityPenaltyTerm.h.