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elastix::VarianceOverLastDimensionMetric< TElastix > Class Template Reference

#include <elxVarianceOverLastDimensionMetric.h>

Detailed Description

template<class TElastix>
class elastix::VarianceOverLastDimensionMetric< TElastix >

Compute the sum of variances over the slowest varying dimension in the moving image.

For a description of this metric see the paper:
Nonrigid registration of dynamic medical imaging data using nD+t B-splines and a groupwise optimization approach, C.T. Metz, S. Klein, M. Schaap, T. van Walsum and W.J. Niessen, Medical Image Analysis, in press.

This metric is based on the AdvancedImageToImageMetric. It is templated over the type of the fixed and moving images to be compared.

This metric computes the sum of variances over the slowest varying dimension in the moving image. The spatial positions of the moving image are established through a Transform. Pixel values are taken from the Moving image.

This implementation is based on the AdvancedImageToImageMetric, which means that:

  • It uses the ImageSampler-framework
  • It makes use of the compact support of B-splines, in case of B-spline transforms.
  • Image derivatives are computed using either the B-spline interpolator's implementation or by nearest neighbor interpolation of a precomputed central difference image.
  • A minimum number of samples that should map within the moving image (mask) can be specified.
Parameters

SampleLastDimensionRandomly: randomly sample a number of time points to to compute the variance from. When set to "false", all time points are taken into account. When set to "true", a random number of time points is selected, which can be set with parameter NumSamplesLastDimension.

NumSamplesLastDimension: the number of random samples to take in the time time direction of the data when SampleLastDimensionRandomly is set to true.

UseZeroAverageDisplacementConstraint: uses the zero average displacement constraint, as described in Nonrigid registration of dynamic medical imaging data using nD+t B-splines and a groupwise optimization approach, Metz et al., Medical Image Analysis, 2011. Subtract the over time computed mean parameter value from each parameter. This should be used when registration is performed directly on the moving image, without using a fixed image. Possible values are "true" or "false". Default is "true".

Definition at line 69 of file elxVarianceOverLastDimensionMetric.h.

Inheritance diagram for elastix::VarianceOverLastDimensionMetric< TElastix >:

Public Types

using BSplineTransformBaseType = itk::AdvancedBSplineDeformableTransformBase<ScalarType, FixedImageDimension>
 
using CombinationTransformType = itk::AdvancedCombinationTransform<ScalarType, FixedImageDimension>
 
using ConstPointer = itk::SmartPointer<const Self>
 
using FixedImageSizeType
 
using ITKBaseType = typename Superclass2::ITKBaseType
 
using Pointer = itk::SmartPointer<Self>
 
using ReducedDimensionBSplineTransformBaseType
 
using Self = VarianceOverLastDimensionMetric
 
using StackTransformType = itk::StackTransform<ScalarType, FixedImageDimension, MovingImageDimension>
 
using Superclass1
 
using Superclass2 = MetricBase<TElastix>
 
- Public Types inherited from itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >
using ConstPointer = SmartPointer<const Self>
 
using DerivativeValueType
 
using FixedImageLimiterOutputType
 
using FixedImageLimiterType
 
using FixedImageMaskPointer
 
using FixedImageMaskType
 
using FixedImagePixelType
 
using FixedImageSizeType = typename FixedImageRegionType::SizeType
 
using ImageSampleContainerPointer
 
using ImageSampleContainerType
 
using ImageSamplerPointer
 
using ImageSamplerType
 
using MovingImageDerivativeScalesType
 
using MovingImageLimiterOutputType
 
using MovingImageLimiterType
 
using MovingImageMaskPointer
 
using MovingImageMaskType
 
using MovingImageRegionType
 
using Pointer = SmartPointer<Self>
 
using Self = VarianceOverLastDimensionImageMetric
 
using Superclass = AdvancedImageToImageMetric<TFixedImage, TMovingImage>
 
- Public Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
using AdvancedTransformType = AdvancedTransform<ScalarType, FixedImageDimension, MovingImageDimension>
 
using BSplineOrder1TransformPointer = typename BSplineOrder1TransformType::Pointer
 
using BSplineOrder1TransformType = AdvancedBSplineDeformableTransform<ScalarType, FixedImageDimension, 1>
 
using BSplineOrder2TransformPointer = typename BSplineOrder2TransformType::Pointer
 
using BSplineOrder2TransformType = AdvancedBSplineDeformableTransform<ScalarType, FixedImageDimension, 2>
 
using BSplineOrder3TransformPointer = typename BSplineOrder3TransformType::Pointer
 
using BSplineOrder3TransformType = AdvancedBSplineDeformableTransform<ScalarType, FixedImageDimension, 3>
 
using CombinationTransformType = AdvancedCombinationTransform<ScalarType, FixedImageDimension>
 
using ConstPointer = SmartPointer<const Self>
 
using DerivativeValueType = typename DerivativeType::ValueType
 
using FixedImageLimiterOutputType = typename FixedImageLimiterType::OutputType
 
using FixedImageLimiterPointer = typename FixedImageLimiterType::Pointer
 
using FixedImageLimiterType = LimiterFunctionBase<RealType, FixedImageDimension>
 
using FixedImageMaskConstPointer = SmartPointer<const FixedImageMaskType>
 
using FixedImageMaskPointer = SmartPointer<FixedImageMaskType>
 
using FixedImageMaskType = ImageMaskSpatialObject<Self::FixedImageDimension>
 
using FixedImagePixelType = typename FixedImageType::PixelType
 
using FixedImagePointer = typename FixedImageType::Pointer
 
using ImageSampleContainerPointer = typename ImageSamplerType::OutputVectorContainerPointer
 
using ImageSampleContainerType = typename ImageSamplerType::OutputVectorContainerType
 
using ImageSamplerPointer = typename ImageSamplerType::Pointer
 
using ImageSamplerType = ImageSamplerBase<FixedImageType>
 
using MovingImageDerivativeScalesType = FixedArray<double, Self::MovingImageDimension>
 
using MovingImageLimiterOutputType = typename MovingImageLimiterType::OutputType
 
using MovingImageLimiterPointer = typename MovingImageLimiterType::Pointer
 
using MovingImageLimiterType = LimiterFunctionBase<RealType, MovingImageDimension>
 
using MovingImageMaskConstPointer = SmartPointer<const MovingImageMaskType>
 
using MovingImageMaskPointer = SmartPointer<MovingImageMaskType>
 
using MovingImageMaskType = ImageMaskSpatialObject<Self::MovingImageDimension>
 
using MovingImagePointer = typename MovingImageType::Pointer
 
using MovingImageRegionType = typename MovingImageType::RegionType
 
using NumberOfParametersType = typename AdvancedTransformType::NumberOfParametersType
 
using Pointer = SmartPointer<Self>
 
using ScalarType = typename TransformType::ScalarType
 
using Self = AdvancedImageToImageMetric
 
using Superclass = ImageToImageMetric<TFixedImage, TMovingImage>
 
using ThreadInfoType = MultiThreaderBase::WorkUnitInfo
 
- Public Types inherited from elastix::MetricBase< TElastix >
using AdvancedMetricType = itk::AdvancedImageToImageMetric<FixedImageType, MovingImageType>
 
using CoordinateRepresentationType = typename ITKBaseType::ParametersValueType
 
using ElastixType
 
using FixedImageType = typename ElastixType::FixedImageType
 
using FixedPointSetType
 
using FixedPointType = typename FixedImageType::PointType
 
using FixedPointValueType = typename FixedPointType::ValueType
 
using ImageSamplerBaseType = typename AdvancedMetricType::ImageSamplerType
 
using ITKBaseType = itk::SingleValuedCostFunction
 
using MeasureType = typename ITKBaseType::MeasureType
 
using MovingImageDerivativeScalesType = typename AdvancedMetricType::MovingImageDerivativeScalesType
 
using MovingImageType = typename ElastixType::MovingImageType
 
using MovingPointSetType
 
using MovingPointType = typename MovingImageType::PointType
 
using MovingPointValueType = typename MovingPointType::ValueType
 
using RegistrationType
 
using Self = MetricBase
 
using Superclass = BaseComponentSE<TElastix>
 
- Public Types inherited from elastix::BaseComponentSE< TElastix >
using ElastixType = TElastix
 
using RegistrationType = typename ElastixType::RegistrationBaseType
 
using Self = BaseComponentSE
 
using Superclass = BaseComponent
 

Public Member Functions

void BeforeEachResolution () override
 
void BeforeRegistration () override
 
 elxClassNameMacro ("VarianceOverLastDimensionMetric")
 
virtual const char * GetClassName () const
 
void Initialize () override
 
 ITK_DISALLOW_COPY_AND_MOVE (VarianceOverLastDimensionMetric)
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
- Public Member Functions inherited from itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >
void GetDerivative (const TransformParametersType &parameters, DerivativeType &derivative) const override
 
virtual int GetNumSamplesLastDimension () const
 
virtual bool GetSampleLastDimensionRandomly () const
 
MeasureType GetValue (const TransformParametersType &parameters) const override
 
void GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const override
 
void Initialize () override
 
 ITK_DISALLOW_COPY_AND_MOVE (VarianceOverLastDimensionImageMetric)
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
virtual void SetGridSize (FixedImageSizeType _arg)
 
virtual void SetNumAdditionalSamplesFixed (unsigned int _arg)
 
virtual void SetNumSamplesLastDimension (unsigned int _arg)
 
virtual void SetReducedDimensionIndex (unsigned int _arg)
 
virtual void SetSampleLastDimensionRandomly (bool _arg)
 
virtual void SetTransformIsStackTransform (bool _arg)
 
virtual void SetUseZeroAverageDisplacementConstraint (bool _arg)
 
- Public Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
virtual void BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const
 
virtual const FixedImageLimiterTypeGetFixedImageLimiter ()
 
const FixedImageMaskTypeGetFixedImageMask () const override
 
virtual double GetFixedLimitRangeRatio () const
 
ImageSamplerTypeGetImageSampler () const
 
virtual const MovingImageDerivativeScalesTypeGetMovingImageDerivativeScales ()
 
virtual const MovingImageLimiterTypeGetMovingImageLimiter ()
 
const MovingImageMaskTypeGetMovingImageMask () const override
 
virtual double GetMovingLimitRangeRatio () const
 
virtual double GetRequiredRatioOfValidSamples () const
 
virtual bool GetScaleGradientWithRespectToMovingImageOrientation () const
 
const AdvancedTransformTypeGetTransform () const override
 
AdvancedTransformTypeGetTransform () override
 
virtual bool GetUseFixedImageLimiter () const
 
virtual bool GetUseImageSampler () const
 
virtual const boolGetUseMetricSingleThreaded ()
 
virtual bool GetUseMovingImageDerivativeScales () const
 
virtual bool GetUseMovingImageLimiter () const
 
virtual const boolGetUseMultiThread ()
 
void Initialize () override
 
 ITK_DISALLOW_COPY_AND_MOVE (AdvancedImageToImageMetric)
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension)
 
virtual void SetFixedImageLimiter (FixedImageLimiterType *_arg)
 
virtual void SetFixedImageMask (const FixedImageMaskType *const arg)
 
virtual void SetFixedLimitRangeRatio (double _arg)
 
virtual void SetImageSampler (ImageSamplerType *_arg)
 
virtual void SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)
 
virtual void SetMovingImageLimiter (MovingImageLimiterType *_arg)
 
virtual void SetMovingImageMask (const MovingImageMaskType *const arg)
 
virtual void SetMovingLimitRangeRatio (double _arg)
 
virtual void SetRequiredRatioOfValidSamples (double _arg)
 
virtual void SetScaleGradientWithRespectToMovingImageOrientation (bool _arg)
 
virtual void SetTransform (AdvancedTransformType *arg)
 
virtual void SetUseMetricSingleThreaded (bool _arg)
 
virtual void SetUseMovingImageDerivativeScales (bool _arg)
 
virtual void SetUseMultiThread (bool _arg)
 
virtual void UseMetricSingleThreadedOff ()
 
virtual void UseMetricSingleThreadedOn ()
 
virtual void UseMultiThreadOff ()
 
virtual void UseMultiThreadOn ()
 
- Public Member Functions inherited from elastix::MetricBase< TElastix >
void AfterEachIterationBase () override
 
void BeforeEachResolutionBase () override
 
virtual ImageSamplerBaseTypeGetAdvancedMetricImageSampler () const
 
virtual bool GetAdvancedMetricUseImageSampler () const
 
ITKBaseTypeGetAsITKBaseType ()
 
const ITKBaseTypeGetAsITKBaseType () const
 
virtual MeasureType GetCurrentExactMetricValue () const
 
virtual bool GetShowExactMetricValue () const
 
 ITK_DISALLOW_COPY_AND_MOVE (MetricBase)
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
virtual void SelectNewSamples ()
 
virtual void SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)
 
- Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
void AddTargetCellToIterationInfo (const char *const name)
 
const ConfigurationGetConfiguration () const
 
ElastixTypeGetElastix () const
 
auto & GetIterationInfoAt (const char *const name)
 
RegistrationTypeGetRegistration () const
 
 ITK_DISALLOW_COPY_AND_MOVE (BaseComponentSE)
 
void RemoveTargetCellFromIterationInfo (const char *const name)
 
void SetConfiguration (const Configuration *_arg)
 
void SetElastix (ElastixType *_arg)
 
- Public Member Functions inherited from elastix::BaseComponent
virtual void AfterEachIteration ()
 
virtual void AfterEachResolution ()
 
virtual void AfterEachResolutionBase ()
 
virtual void AfterRegistration ()
 
virtual void AfterRegistrationBase ()
 
virtual int BeforeAll ()
 
virtual int BeforeAllBase ()
 
virtual void BeforeRegistrationBase ()
 
virtual const char * elxGetClassName () const
 
const char * GetComponentLabel () const
 
 ITK_DISALLOW_COPY_AND_MOVE (BaseComponent)
 
 itkTypeMacroNoParent (BaseComponent)
 
void SetComponentLabel (const char *label, unsigned int idx)
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >
static Pointer New ()
 
- Static Public Member Functions inherited from elastix::BaseComponent
template<typename TBaseComponent >
static auto AsITKBaseType (TBaseComponent *const baseComponent) -> decltype(baseComponent->GetAsITKBaseType())
 
static void InitializeElastixExecutable ()
 
static bool IsElastixLibrary ()
 

Protected Member Functions

 VarianceOverLastDimensionMetric ()=default
 
 ~VarianceOverLastDimensionMetric () override=default
 
- Protected Member Functions inherited from itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >
void EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const override
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
 VarianceOverLastDimensionImageMetric ()
 
 ~VarianceOverLastDimensionImageMetric () override=default
 
- Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
 AdvancedImageToImageMetric ()
 
virtual void AfterThreadedGetValue (MeasureType &) const
 
virtual void AfterThreadedGetValueAndDerivative (MeasureType &, DerivativeType &) const
 
void CheckForAdvancedTransform ()
 
void CheckForBSplineInterpolator ()
 
void CheckForBSplineTransform () const
 
void CheckNumberOfSamples (unsigned long wanted, unsigned long found) const
 
virtual bool EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const
 
bool EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
 
bool FastEvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient, const ThreadIdType threadId) const
 
virtual void InitializeImageSampler ()
 
void InitializeLimiters ()
 
virtual void InitializeThreadingParameters () const
 
virtual bool IsInsideMovingMask (const MovingImagePointType &point) const
 
 itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct)
 
 itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct)
 
void LaunchGetValueAndDerivativeThreaderCallback () const
 
void LaunchGetValueThreaderCallback () const
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
void SetFixedImageMask (const typename Superclass::FixedImageMaskType *) final
 
void SetFixedImageMask (typename Superclass::FixedImageMaskType *) final
 
void SetMovingImageMask (const typename Superclass::MovingImageMaskType *) final
 
void SetMovingImageMask (typename Superclass::MovingImageMaskType *) final
 
virtual void SetUseFixedImageLimiter (bool _arg)
 
virtual void SetUseImageSampler (bool _arg)
 
virtual void SetUseMovingImageLimiter (bool _arg)
 
virtual void ThreadedGetValue (ThreadIdType) const
 
virtual void ThreadedGetValueAndDerivative (ThreadIdType) const
 
MovingImagePointType TransformPoint (const FixedImagePointType &fixedImagePoint) const
 
 ~AdvancedImageToImageMetric () override=default
 
- Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType GetExactValue (const ParametersType &parameters)
 
 MetricBase ()=default
 
 ~MetricBase () override=default
 
- Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
 BaseComponentSE ()=default
 
 ~BaseComponentSE () override=default
 
- Protected Member Functions inherited from elastix::BaseComponent
 BaseComponent ()=default
 
virtual ~BaseComponent ()=default
 

Private Attributes

 elxOverrideGetSelfMacro
 

Additional Inherited Members

- Protected Types inherited from itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >
using BSplineInterpolatorType
 
using FixedImageContinuousIndexType
 
using FixedImageIndexType
 
using FixedImageIndexValueType
 
using FixedImagePointType
 
using MovingImageContinuousIndexType
 
using MovingImageDerivativeType
 
using MovingImageIndexType
 
using MovingImagePointType
 
using NonZeroJacobianIndicesType
 
- Protected Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
using BSplineInterpolatorFloatPointer = typename BSplineInterpolatorFloatType::Pointer
 
using BSplineInterpolatorFloatType
 
using BSplineInterpolatorPointer = typename BSplineInterpolatorType::Pointer
 
using BSplineInterpolatorType
 
using FixedImageIndexType = typename FixedImageType::IndexType
 
using FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType
 
using FixedImagePointType = typename TransformType::InputPointType
 
using LinearInterpolatorPointer = typename LinearInterpolatorType::Pointer
 
using LinearInterpolatorType = AdvancedLinearInterpolateImageFunction<MovingImageType, CoordinateRepresentationType>
 
using MovingImageContinuousIndexType = typename InterpolatorType::ContinuousIndexType
 
using MovingImageDerivativeType = typename BSplineInterpolatorType::CovariantVectorType
 
using MovingImageIndexType = typename MovingImageType::IndexType
 
using MovingImagePointType = typename TransformType::OutputPointType
 
using NonZeroJacobianIndicesType = typename AdvancedTransformType::NonZeroJacobianIndicesType
 
using ReducedBSplineInterpolatorPointer = typename ReducedBSplineInterpolatorType::Pointer
 
using ReducedBSplineInterpolatorType
 
- Protected Types inherited from elastix::MetricBase< TElastix >
using ExactMetricImageSamplerPointer = typename ExactMetricImageSamplerType::Pointer
 
using ExactMetricImageSamplerType = itk::ImageGridSampler<FixedImageType>
 
using ExactMetricSampleGridSpacingType = typename ExactMetricImageSamplerType::SampleGridSpacingType
 
using ParametersType = typename ITKBaseType::ParametersType
 
- Static Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION AccumulateDerivativesThreaderCallback (void *arg)
 
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION GetValueAndDerivativeThreaderCallback (void *arg)
 
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION GetValueThreaderCallback (void *arg)
 
- Protected Attributes inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
AdvancedTransformType::Pointer m_AdvancedTransform { nullptr }
 
FixedImageLimiterOutputType m_FixedImageMaxLimit { 1 }
 
FixedImageLimiterOutputType m_FixedImageMinLimit { 0 }
 
FixedImagePixelType m_FixedImageTrueMax { 1 }
 
FixedImagePixelType m_FixedImageTrueMin { 0 }
 
double m_FixedLimitRangeRatio { 0.01 }
 
std::unique_ptr< AlignedGetValueAndDerivativePerThreadStruct[]> m_GetValueAndDerivativePerThreadVariables
 
ThreadIdType m_GetValueAndDerivativePerThreadVariablesSize { 0 }
 
ImageSamplerPointer m_ImageSampler { nullptr }
 
MovingImageLimiterOutputType m_MovingImageMaxLimit { 1 }
 
MovingImageLimiterOutputType m_MovingImageMinLimit { 0 }
 
MovingImagePixelType m_MovingImageTrueMax { 1 }
 
MovingImagePixelType m_MovingImageTrueMin { 0 }
 
double m_MovingLimitRangeRatio { 0.01 }
 
MultiThreaderParameterType m_ThreaderMetricParameters {}
 
bool m_TransformIsBSpline { false }
 
bool m_UseMetricSingleThreaded { true }
 
bool m_UseMultiThread { false }
 
- Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType m_CurrentExactMetricValue { 0.0 }
 
unsigned int m_ExactMetricEachXNumberOfIterations { 1 }
 
ExactMetricSampleGridSpacingType m_ExactMetricSampleGridSpacing
 
ExactMetricImageSamplerPointer m_ExactMetricSampler { nullptr }
 
bool m_ShowExactMetricValue { false }
 
- Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
Configuration::ConstPointer m_Configuration {}
 
itk::WeakPointer< TElastix > m_Elastix {}
 
RegistrationTypem_Registration {}
 

Member Typedef Documentation

◆ BSplineTransformBaseType

template<class TElastix >
using elastix::VarianceOverLastDimensionMetric< TElastix >::BSplineTransformBaseType = itk::AdvancedBSplineDeformableTransformBase<ScalarType, FixedImageDimension>

Typedef's for the B-spline transform.

Definition at line 150 of file elxVarianceOverLastDimensionMetric.h.

◆ CombinationTransformType

template<class TElastix >
using elastix::VarianceOverLastDimensionMetric< TElastix >::CombinationTransformType = itk::AdvancedCombinationTransform<ScalarType, FixedImageDimension>

Definition at line 151 of file elxVarianceOverLastDimensionMetric.h.

◆ ConstPointer

template<class TElastix >
using elastix::VarianceOverLastDimensionMetric< TElastix >::ConstPointer = itk::SmartPointer<const Self>

Definition at line 83 of file elxVarianceOverLastDimensionMetric.h.

◆ FixedImageSizeType

template<class TElastix >
using itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::FixedImageSizeType

Definition at line 65 of file itkVarianceOverLastDimensionImageMetric.h.

◆ ITKBaseType

template<class TElastix >
using elastix::VarianceOverLastDimensionMetric< TElastix >::ITKBaseType = typename Superclass2::ITKBaseType

Definition at line 147 of file elxVarianceOverLastDimensionMetric.h.

◆ Pointer

template<class TElastix >
using elastix::VarianceOverLastDimensionMetric< TElastix >::Pointer = itk::SmartPointer<Self>

Definition at line 82 of file elxVarianceOverLastDimensionMetric.h.

◆ ReducedDimensionBSplineTransformBaseType

template<class TElastix >
using elastix::VarianceOverLastDimensionMetric< TElastix >::ReducedDimensionBSplineTransformBaseType
Initial value:
Base class for deformable transform using a B-spline representation.
typename TransformType::ScalarType ScalarType

Definition at line 153 of file elxVarianceOverLastDimensionMetric.h.

◆ Self

template<class TElastix >
using elastix::VarianceOverLastDimensionMetric< TElastix >::Self = VarianceOverLastDimensionMetric

Standard ITK-stuff.

Definition at line 78 of file elxVarianceOverLastDimensionMetric.h.

◆ StackTransformType

template<class TElastix >
using elastix::VarianceOverLastDimensionMetric< TElastix >::StackTransformType = itk::StackTransform<ScalarType, FixedImageDimension, MovingImageDimension>

Definition at line 152 of file elxVarianceOverLastDimensionMetric.h.

◆ Superclass1

template<class TElastix >
using elastix::VarianceOverLastDimensionMetric< TElastix >::Superclass1
Initial value:

Definition at line 79 of file elxVarianceOverLastDimensionMetric.h.

◆ Superclass2

template<class TElastix >
using elastix::VarianceOverLastDimensionMetric< TElastix >::Superclass2 = MetricBase<TElastix>

Definition at line 81 of file elxVarianceOverLastDimensionMetric.h.

Constructor & Destructor Documentation

◆ VarianceOverLastDimensionMetric()

template<class TElastix >
elastix::VarianceOverLastDimensionMetric< TElastix >::VarianceOverLastDimensionMetric ( )
protecteddefault

The constructor.

◆ ~VarianceOverLastDimensionMetric()

template<class TElastix >
elastix::VarianceOverLastDimensionMetric< TElastix >::~VarianceOverLastDimensionMetric ( )
overrideprotecteddefault

The destructor.

Member Function Documentation

◆ BeforeEachResolution()

template<class TElastix >
void elastix::VarianceOverLastDimensionMetric< TElastix >::BeforeEachResolution ( )
overridevirtual

Do some things before each resolution:

  • Set CheckNumberOfSamples setting
  • Set UseNormalization setting

Reimplemented from elastix::BaseComponent.

◆ BeforeRegistration()

template<class TElastix >
void elastix::VarianceOverLastDimensionMetric< TElastix >::BeforeRegistration ( )
overridevirtual

Do some things before registration:

  • check the direction cosines

Reimplemented from elastix::BaseComponent.

◆ elxClassNameMacro()

template<class TElastix >
elastix::VarianceOverLastDimensionMetric< TElastix >::elxClassNameMacro ( "VarianceOverLastDimensionMetric< TElastix >" )

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "VarianceOverLastDimensionMetric")

◆ GetClassName()

template<class TElastix >
virtual const char * elastix::VarianceOverLastDimensionMetric< TElastix >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >.

◆ Initialize()

template<class TElastix >
void elastix::VarianceOverLastDimensionMetric< TElastix >::Initialize ( )
override

Sets up a timer to measure the initialization time and calls the Superclass' implementation.

◆ ITK_DISALLOW_COPY_AND_MOVE()

template<class TElastix >
elastix::VarianceOverLastDimensionMetric< TElastix >::ITK_DISALLOW_COPY_AND_MOVE ( VarianceOverLastDimensionMetric< TElastix > )

◆ itkStaticConstMacro() [1/2]

template<class TElastix >
elastix::VarianceOverLastDimensionMetric< TElastix >::itkStaticConstMacro ( FixedImageDimension ,
unsigned int ,
FixedImageType::ImageDimension  )

The fixed image dimension.

◆ itkStaticConstMacro() [2/2]

template<class TElastix >
elastix::VarianceOverLastDimensionMetric< TElastix >::itkStaticConstMacro ( MovingImageDimension ,
unsigned int ,
MovingImageType::ImageDimension  )

The moving image dimension.

◆ New()

template<class TElastix >
static Pointer elastix::VarianceOverLastDimensionMetric< TElastix >::New ( )
static

Method for creation through the object factory.

Field Documentation

◆ elxOverrideGetSelfMacro

template<class TElastix >
elastix::VarianceOverLastDimensionMetric< TElastix >::elxOverrideGetSelfMacro
private

Definition at line 184 of file elxVarianceOverLastDimensionMetric.h.



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