#include <elxVarianceOverLastDimensionMetric.h>

Detailed Description

template<class TElastix>
class elastix::VarianceOverLastDimensionMetric< TElastix >

Compute the sum of variances over the slowest varying dimension in the moving image.

For a description of this metric see the paper:
Nonrigid registration of dynamic medical imaging data using nD+t B-splines and a groupwise optimization approach, C.T. Metz, S. Klein, M. Schaap, T. van Walsum and W.J. Niessen, Medical Image Analysis, in press.

This metric is based on the AdvancedImageToImageMetric. It is templated over the type of the fixed and moving images to be compared.

This metric computes the sum of variances over the slowest varying dimension in the moving image. The spatial positions of the moving image are established through a Transform. Pixel values are taken from the Moving image.

This implementation is based on the AdvancedImageToImageMetric, which means that:

It uses the ImageSampler-framework
It makes use of the compact support of B-splines, in case of B-spline transforms.
Image derivatives are computed using either the B-spline interpolator's implementation or by nearest neighbor interpolation of a precomputed central difference image.
A minimum number of samples that should map within the moving image (mask) can be specified.

Parameters

SampleLastDimensionRandomly: randomly sample a number of time points to to compute the variance from. When set to "false", all time points are taken into account. When set to "true", a random number of time points is selected, which can be set with parameter NumSamplesLastDimension.

NumSamplesLastDimension: the number of random samples to take in the time time direction of the data when SampleLastDimensionRandomly is set to true.

UseZeroAverageDisplacementConstraint: uses the zero average displacement constraint, as described in Nonrigid registration of dynamic medical imaging data using nD+t B-splines and a groupwise optimization approach, Metz et al., Medical Image Analysis, 2011. Subtract the over time computed mean parameter value from each parameter. This should be used when registration is performed directly on the moving image, without using a fixed image. Possible values are "true" or "false". Default is "true".

Definition at line 69 of file elxVarianceOverLastDimensionMetric.h.

Inheritance diagram for elastix::VarianceOverLastDimensionMetric< TElastix >:

[legend]

Public Types
using	BSplineTransformBaseType = itk::AdvancedBSplineDeformableTransformBase<ScalarType, FixedImageDimension>

using	CombinationTransformType = itk::AdvancedCombinationTransform<ScalarType, FixedImageDimension>

using	ConstPointer = itk::SmartPointer<const Self>

using	FixedImageSizeType

using	ITKBaseType = typename Superclass2::ITKBaseType

using	Pointer = itk::SmartPointer<Self>

using	ReducedDimensionBSplineTransformBaseType

using	Self = VarianceOverLastDimensionMetric

using	StackTransformType = itk::StackTransform<ScalarType, FixedImageDimension, MovingImageDimension>

using	Superclass1

using	Superclass2 = MetricBase<TElastix>

Public Types inherited from itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >
using	ConstPointer = SmartPointer<const Self>

using	DerivativeValueType

using	FixedImageLimiterOutputType

using	FixedImageLimiterType

using	FixedImageMaskPointer

using	FixedImageMaskType

using	FixedImagePixelType

using	FixedImageSizeType = typename FixedImageRegionType::SizeType

using	ImageSampleContainerPointer

using	ImageSampleContainerType

using	ImageSamplerPointer

using	ImageSamplerType

using	MovingImageDerivativeScalesType

using	MovingImageLimiterOutputType

using	MovingImageLimiterType

using	MovingImageMaskPointer

using	MovingImageMaskType

using	MovingImageRegionType

using	Pointer = SmartPointer<Self>

using	Self = VarianceOverLastDimensionImageMetric

using	Superclass = AdvancedImageToImageMetric<TFixedImage, TMovingImage>

Public Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
using	AdvancedTransformType = AdvancedTransform<ScalarType, FixedImageDimension, MovingImageDimension>

using	BSplineOrder1TransformPointer = typename BSplineOrder1TransformType::Pointer

using	BSplineOrder1TransformType = AdvancedBSplineDeformableTransform<ScalarType, FixedImageDimension, 1>

using	BSplineOrder2TransformPointer = typename BSplineOrder2TransformType::Pointer

using	BSplineOrder2TransformType = AdvancedBSplineDeformableTransform<ScalarType, FixedImageDimension, 2>

using	BSplineOrder3TransformPointer = typename BSplineOrder3TransformType::Pointer

using	BSplineOrder3TransformType = AdvancedBSplineDeformableTransform<ScalarType, FixedImageDimension, 3>

using	CombinationTransformType = AdvancedCombinationTransform<ScalarType, FixedImageDimension>

using	ConstPointer = SmartPointer<const Self>

using	DerivativeValueType = typename DerivativeType::ValueType

using	FixedImageLimiterOutputType = typename FixedImageLimiterType::OutputType

using	FixedImageLimiterPointer = typename FixedImageLimiterType::Pointer

using	FixedImageLimiterType = LimiterFunctionBase<RealType, FixedImageDimension>

using	FixedImageMaskConstPointer = SmartPointer<const FixedImageMaskType>

using	FixedImageMaskPointer = SmartPointer<FixedImageMaskType>

using	FixedImageMaskType = ImageMaskSpatialObject<Self::FixedImageDimension>

using	FixedImagePixelType = typename FixedImageType::PixelType

using	FixedImagePointer = typename FixedImageType::Pointer

using	ImageSampleContainerPointer = typename ImageSamplerType::OutputVectorContainerPointer

using	ImageSampleContainerType = typename ImageSamplerType::OutputVectorContainerType

using	ImageSamplerPointer = typename ImageSamplerType::Pointer

using	ImageSamplerType = ImageSamplerBase<FixedImageType>

using	MovingImageDerivativeScalesType = FixedArray<double, Self::MovingImageDimension>

using	MovingImageLimiterOutputType = typename MovingImageLimiterType::OutputType

using	MovingImageLimiterPointer = typename MovingImageLimiterType::Pointer

using	MovingImageLimiterType = LimiterFunctionBase<RealType, MovingImageDimension>

using	MovingImageMaskConstPointer = SmartPointer<const MovingImageMaskType>

using	MovingImageMaskPointer = SmartPointer<MovingImageMaskType>

using	MovingImageMaskType = ImageMaskSpatialObject<Self::MovingImageDimension>

using	MovingImagePointer = typename MovingImageType::Pointer

using	MovingImageRegionType = typename MovingImageType::RegionType

using	NumberOfParametersType = typename AdvancedTransformType::NumberOfParametersType

using	Pointer = SmartPointer<Self>

using	ScalarType = typename TransformType::ScalarType

using	Self = AdvancedImageToImageMetric

using	Superclass = ImageToImageMetric<TFixedImage, TMovingImage>

using	ThreadInfoType = MultiThreaderBase::WorkUnitInfo

Public Types inherited from elastix::MetricBase< TElastix >
using	AdvancedMetricType = itk::AdvancedImageToImageMetric<FixedImageType, MovingImageType>

using	CoordinateRepresentationType = typename ITKBaseType::ParametersValueType

using	ElastixType

using	FixedImageType = typename ElastixType::FixedImageType

using	FixedPointSetType

using	FixedPointType = typename FixedImageType::PointType

using	FixedPointValueType = typename FixedPointType::ValueType

using	ImageSamplerBaseType = typename AdvancedMetricType::ImageSamplerType

using	ITKBaseType = itk::SingleValuedCostFunction

using	MeasureType = typename ITKBaseType::MeasureType

using	MovingImageDerivativeScalesType = typename AdvancedMetricType::MovingImageDerivativeScalesType

using	MovingImageType = typename ElastixType::MovingImageType

using	MovingPointSetType

using	MovingPointType = typename MovingImageType::PointType

using	MovingPointValueType = typename MovingPointType::ValueType

using	RegistrationType

using	Self = MetricBase

using	Superclass = BaseComponentSE<TElastix>

Public Types inherited from elastix::BaseComponentSE< TElastix >
using	ElastixType = TElastix

using	RegistrationType = typename ElastixType::RegistrationBaseType

using	Self = BaseComponentSE

using	Superclass = BaseComponent

Public Member Functions
void	BeforeEachResolution () override

void	BeforeRegistration () override

	elxClassNameMacro ("VarianceOverLastDimensionMetric")

virtual const char *	GetClassName () const

void	Initialize () override

	ITK_DISALLOW_COPY_AND_MOVE (VarianceOverLastDimensionMetric)

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

Public Member Functions inherited from itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >
void	GetDerivative (const TransformParametersType &parameters, DerivativeType &derivative) const override

virtual int	GetNumSamplesLastDimension () const

virtual bool	GetSampleLastDimensionRandomly () const

MeasureType	GetValue (const TransformParametersType &parameters) const override

void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const override

void	Initialize () override

	ITK_DISALLOW_COPY_AND_MOVE (VarianceOverLastDimensionImageMetric)

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

virtual void	SetGridSize (FixedImageSizeType _arg)

virtual void	SetNumAdditionalSamplesFixed (unsigned int _arg)

virtual void	SetNumSamplesLastDimension (unsigned int _arg)

virtual void	SetReducedDimensionIndex (unsigned int _arg)

virtual void	SetSampleLastDimensionRandomly (bool _arg)

virtual void	SetTransformIsStackTransform (bool _arg)

virtual void	SetUseZeroAverageDisplacementConstraint (bool _arg)

Public Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
virtual void	BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const

virtual const FixedImageLimiterType *	GetFixedImageLimiter ()

const FixedImageMaskType *	GetFixedImageMask () const override

virtual double	GetFixedLimitRangeRatio () const

ImageSamplerType *	GetImageSampler () const

virtual const MovingImageDerivativeScalesType &	GetMovingImageDerivativeScales ()

virtual const MovingImageLimiterType *	GetMovingImageLimiter ()

const MovingImageMaskType *	GetMovingImageMask () const override

virtual double	GetMovingLimitRangeRatio () const

virtual double	GetRequiredRatioOfValidSamples () const

virtual bool	GetScaleGradientWithRespectToMovingImageOrientation () const

const AdvancedTransformType *	GetTransform () const override

AdvancedTransformType *	GetTransform () override

virtual bool	GetUseFixedImageLimiter () const

virtual bool	GetUseImageSampler () const

virtual const bool &	GetUseMetricSingleThreaded ()

virtual bool	GetUseMovingImageDerivativeScales () const

virtual bool	GetUseMovingImageLimiter () const

virtual const bool &	GetUseMultiThread ()

void	Initialize () override

	ITK_DISALLOW_COPY_AND_MOVE (AdvancedImageToImageMetric)

	itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension)

virtual void	SetFixedImageLimiter (FixedImageLimiterType *_arg)

virtual void	SetFixedImageMask (const FixedImageMaskType *const arg)

virtual void	SetFixedLimitRangeRatio (double _arg)

virtual void	SetImageSampler (ImageSamplerType *_arg)

virtual void	SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)

virtual void	SetMovingImageLimiter (MovingImageLimiterType *_arg)

virtual void	SetMovingImageMask (const MovingImageMaskType *const arg)

virtual void	SetMovingLimitRangeRatio (double _arg)

virtual void	SetRequiredRatioOfValidSamples (double _arg)

virtual void	SetScaleGradientWithRespectToMovingImageOrientation (bool _arg)

virtual void	SetTransform (AdvancedTransformType *arg)

virtual void	SetUseMetricSingleThreaded (bool _arg)

virtual void	SetUseMovingImageDerivativeScales (bool _arg)

virtual void	SetUseMultiThread (bool _arg)

virtual void	UseMetricSingleThreadedOff ()

virtual void	UseMetricSingleThreadedOn ()

virtual void	UseMultiThreadOff ()

virtual void	UseMultiThreadOn ()

Public Member Functions inherited from elastix::MetricBase< TElastix >
void	AfterEachIterationBase () override

void	BeforeEachResolutionBase () override

virtual ImageSamplerBaseType *	GetAdvancedMetricImageSampler () const

virtual bool	GetAdvancedMetricUseImageSampler () const

ITKBaseType *	GetAsITKBaseType ()

const ITKBaseType *	GetAsITKBaseType () const

virtual MeasureType	GetCurrentExactMetricValue () const

virtual bool	GetShowExactMetricValue () const

	ITK_DISALLOW_COPY_AND_MOVE (MetricBase)

	itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)

	itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)

virtual void	SelectNewSamples ()

virtual void	SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)

Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
void	AddTargetCellToIterationInfo (const char *const name)

const Configuration *	GetConfiguration () const

ElastixType *	GetElastix () const

auto &	GetIterationInfoAt (const char *const name)

RegistrationType *	GetRegistration () const

	ITK_DISALLOW_COPY_AND_MOVE (BaseComponentSE)

void	RemoveTargetCellFromIterationInfo (const char *const name)

void	SetConfiguration (const Configuration *_arg)

void	SetElastix (ElastixType *_arg)

Public Member Functions inherited from elastix::BaseComponent
virtual void	AfterEachIteration ()

virtual void	AfterEachResolution ()

virtual void	AfterEachResolutionBase ()

virtual void	AfterRegistration ()

virtual void	AfterRegistrationBase ()

virtual int	BeforeAll ()

virtual int	BeforeAllBase ()

virtual void	BeforeRegistrationBase ()

virtual const char *	elxGetClassName () const

const char *	GetComponentLabel () const

	ITK_DISALLOW_COPY_AND_MOVE (BaseComponent)

	itkTypeMacroNoParent (BaseComponent)

void	SetComponentLabel (const char *label, unsigned int idx)

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >
static Pointer	New ()

Static Public Member Functions inherited from elastix::BaseComponent
template<typename TBaseComponent >
static auto	AsITKBaseType (TBaseComponent *const baseComponent) -> decltype(baseComponent->GetAsITKBaseType())

static void	InitializeElastixExecutable ()

static bool	IsElastixLibrary ()

Protected Member Functions
	VarianceOverLastDimensionMetric ()=default

	~VarianceOverLastDimensionMetric () override=default

Protected Member Functions inherited from itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >
void	EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const override

void	PrintSelf (std::ostream &os, Indent indent) const override

	VarianceOverLastDimensionImageMetric ()

	~VarianceOverLastDimensionImageMetric () override=default

Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
	AdvancedImageToImageMetric ()

virtual void	AfterThreadedGetValue (MeasureType &) const

virtual void	AfterThreadedGetValueAndDerivative (MeasureType &, DerivativeType &) const

void	CheckForAdvancedTransform ()

void	CheckForBSplineInterpolator ()

void	CheckForBSplineTransform () const

void	CheckNumberOfSamples (unsigned long wanted, unsigned long found) const

virtual bool	EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const

bool	EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const

bool	FastEvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient, const ThreadIdType threadId) const

virtual void	InitializeImageSampler ()

void	InitializeLimiters ()

virtual void	InitializeThreadingParameters () const

virtual bool	IsInsideMovingMask (const MovingImagePointType &point) const

	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct)

	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct)

void	LaunchGetValueAndDerivativeThreaderCallback () const

void	LaunchGetValueThreaderCallback () const

void	PrintSelf (std::ostream &os, Indent indent) const override

void	SetFixedImageMask (const typename Superclass::FixedImageMaskType *) final

void	SetFixedImageMask (typename Superclass::FixedImageMaskType *) final

void	SetMovingImageMask (const typename Superclass::MovingImageMaskType *) final

void	SetMovingImageMask (typename Superclass::MovingImageMaskType *) final

virtual void	SetUseFixedImageLimiter (bool _arg)

virtual void	SetUseImageSampler (bool _arg)

virtual void	SetUseMovingImageLimiter (bool _arg)

virtual void	ThreadedGetValue (ThreadIdType) const

virtual void	ThreadedGetValueAndDerivative (ThreadIdType) const

MovingImagePointType	TransformPoint (const FixedImagePointType &fixedImagePoint) const

	~AdvancedImageToImageMetric () override=default

Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType	GetExactValue (const ParametersType &parameters)

	MetricBase ()=default

	~MetricBase () override=default

Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
	BaseComponentSE ()=default

	~BaseComponentSE () override=default

Protected Member Functions inherited from elastix::BaseComponent
	BaseComponent ()=default

virtual	~BaseComponent ()=default

Private Attributes
	elxOverrideGetSelfMacro

Additional Inherited Members
Protected Types inherited from itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >
using	BSplineInterpolatorType

using	FixedImageContinuousIndexType

using	FixedImageIndexType

using	FixedImageIndexValueType

using	FixedImagePointType

using	MovingImageContinuousIndexType

using	MovingImageDerivativeType

using	MovingImageIndexType

using	MovingImagePointType

using	NonZeroJacobianIndicesType

Protected Types inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
using	BSplineInterpolatorFloatPointer = typename BSplineInterpolatorFloatType::Pointer

using	BSplineInterpolatorFloatType

using	BSplineInterpolatorPointer = typename BSplineInterpolatorType::Pointer

using	BSplineInterpolatorType

using	FixedImageIndexType = typename FixedImageType::IndexType

using	FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType

using	FixedImagePointType = typename TransformType::InputPointType

using	LinearInterpolatorPointer = typename LinearInterpolatorType::Pointer

using	LinearInterpolatorType = AdvancedLinearInterpolateImageFunction<MovingImageType, CoordinateRepresentationType>

using	MovingImageContinuousIndexType = typename InterpolatorType::ContinuousIndexType

using	MovingImageDerivativeType = typename BSplineInterpolatorType::CovariantVectorType

using	MovingImageIndexType = typename MovingImageType::IndexType

using	MovingImagePointType = typename TransformType::OutputPointType

using	NonZeroJacobianIndicesType = typename AdvancedTransformType::NonZeroJacobianIndicesType

using	ReducedBSplineInterpolatorPointer = typename ReducedBSplineInterpolatorType::Pointer

using	ReducedBSplineInterpolatorType

Protected Types inherited from elastix::MetricBase< TElastix >
using	ExactMetricImageSamplerPointer = typename ExactMetricImageSamplerType::Pointer

using	ExactMetricImageSamplerType = itk::ImageGridSampler<FixedImageType>

using	ExactMetricSampleGridSpacingType = typename ExactMetricImageSamplerType::SampleGridSpacingType

using	ParametersType = typename ITKBaseType::ParametersType

Static Protected Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	AccumulateDerivativesThreaderCallback (void *arg)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueAndDerivativeThreaderCallback (void *arg)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueThreaderCallback (void *arg)

Protected Attributes inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
AdvancedTransformType::Pointer	m_AdvancedTransform { nullptr }

FixedImageLimiterOutputType	m_FixedImageMaxLimit { 1 }

FixedImageLimiterOutputType	m_FixedImageMinLimit { 0 }

FixedImagePixelType	m_FixedImageTrueMax { 1 }

FixedImagePixelType	m_FixedImageTrueMin { 0 }

double	m_FixedLimitRangeRatio { 0.01 }

std::unique_ptr< AlignedGetValueAndDerivativePerThreadStruct[]>	m_GetValueAndDerivativePerThreadVariables

ThreadIdType	m_GetValueAndDerivativePerThreadVariablesSize { 0 }

ImageSamplerPointer	m_ImageSampler { nullptr }

MovingImageLimiterOutputType	m_MovingImageMaxLimit { 1 }

MovingImageLimiterOutputType	m_MovingImageMinLimit { 0 }

MovingImagePixelType	m_MovingImageTrueMax { 1 }

MovingImagePixelType	m_MovingImageTrueMin { 0 }

double	m_MovingLimitRangeRatio { 0.01 }

MultiThreaderParameterType	m_ThreaderMetricParameters {}

bool	m_TransformIsBSpline { false }

bool	m_UseMetricSingleThreaded { true }

bool	m_UseMultiThread { false }

Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType	m_CurrentExactMetricValue { 0.0 }

unsigned int	m_ExactMetricEachXNumberOfIterations { 1 }

ExactMetricSampleGridSpacingType	m_ExactMetricSampleGridSpacing

ExactMetricImageSamplerPointer	m_ExactMetricSampler { nullptr }

bool	m_ShowExactMetricValue { false }

Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
Configuration::ConstPointer	m_Configuration {}

itk::WeakPointer< TElastix >	m_Elastix {}

RegistrationType *	m_Registration {}

Member Typedef Documentation

◆ BSplineTransformBaseType

template<class TElastix >

using elastix::VarianceOverLastDimensionMetric< TElastix >::BSplineTransformBaseType = itk::AdvancedBSplineDeformableTransformBase<ScalarType, FixedImageDimension>

Typedef's for the B-spline transform.

Definition at line 150 of file elxVarianceOverLastDimensionMetric.h.

◆ CombinationTransformType

template<class TElastix >

using elastix::VarianceOverLastDimensionMetric< TElastix >::CombinationTransformType = itk::AdvancedCombinationTransform<ScalarType, FixedImageDimension>

Definition at line 151 of file elxVarianceOverLastDimensionMetric.h.

◆ ConstPointer

template<class TElastix >

using elastix::VarianceOverLastDimensionMetric< TElastix >::ConstPointer = itk::SmartPointer<const Self>

Definition at line 83 of file elxVarianceOverLastDimensionMetric.h.

◆ FixedImageSizeType

template<class TElastix >

using itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >::FixedImageSizeType

Definition at line 65 of file itkVarianceOverLastDimensionImageMetric.h.

◆ ITKBaseType

template<class TElastix >

using elastix::VarianceOverLastDimensionMetric< TElastix >::ITKBaseType = typename Superclass2::ITKBaseType

Definition at line 147 of file elxVarianceOverLastDimensionMetric.h.

◆ Pointer

template<class TElastix >

using elastix::VarianceOverLastDimensionMetric< TElastix >::Pointer = itk::SmartPointer<Self>

Definition at line 82 of file elxVarianceOverLastDimensionMetric.h.

◆ ReducedDimensionBSplineTransformBaseType

template<class TElastix >

using elastix::VarianceOverLastDimensionMetric< TElastix >::ReducedDimensionBSplineTransformBaseType

Initial value:

itk::AdvancedBSplineDeformableTransformBase<ScalarType, FixedImageDimension - 1>

itk::AdvancedBSplineDeformableTransformBase

Base class for deformable transform using a B-spline representation.

Definition itkAdvancedBSplineDeformableTransformBase.h:43

itk::AdvancedImageToImageMetric::ScalarType

typename TransformType::ScalarType ScalarType

Definition itkAdvancedImageToImageMetric.h:156

Definition at line 153 of file elxVarianceOverLastDimensionMetric.h.

◆ Self

template<class TElastix >

using elastix::VarianceOverLastDimensionMetric< TElastix >::Self = VarianceOverLastDimensionMetric

Standard ITK-stuff.

Definition at line 78 of file elxVarianceOverLastDimensionMetric.h.

◆ StackTransformType

template<class TElastix >

using elastix::VarianceOverLastDimensionMetric< TElastix >::StackTransformType = itk::StackTransform<ScalarType, FixedImageDimension, MovingImageDimension>

Definition at line 152 of file elxVarianceOverLastDimensionMetric.h.

◆ Superclass1

template<class TElastix >

using elastix::VarianceOverLastDimensionMetric< TElastix >::Superclass1

Initial value:

itk::VarianceOverLastDimensionImageMetric<typename MetricBase<TElastix>::FixedImageType,

typename MetricBase<TElastix>::MovingImageType>

elastix::MetricBase::MovingImageType

typename ElastixType::MovingImageType MovingImageType

Definition elxMetricBase.h:92

itk::VarianceOverLastDimensionImageMetric

Compute the sum of variances over the slowest varying dimension in the moving image.

Definition itkVarianceOverLastDimensionImageMetric.h:54

Definition at line 79 of file elxVarianceOverLastDimensionMetric.h.

◆ Superclass2

template<class TElastix >

using elastix::VarianceOverLastDimensionMetric< TElastix >::Superclass2 = MetricBase<TElastix>

Definition at line 81 of file elxVarianceOverLastDimensionMetric.h.

Constructor & Destructor Documentation

◆ VarianceOverLastDimensionMetric()

template<class TElastix >

elastix::VarianceOverLastDimensionMetric< TElastix >::VarianceOverLastDimensionMetric ( )

protecteddefault

The constructor.

◆ ~VarianceOverLastDimensionMetric()

template<class TElastix >

elastix::VarianceOverLastDimensionMetric< TElastix >::~VarianceOverLastDimensionMetric ( )

overrideprotecteddefault

The destructor.

Member Function Documentation

◆ BeforeEachResolution()

template<class TElastix >

void elastix::VarianceOverLastDimensionMetric< TElastix >::BeforeEachResolution ( )

overridevirtual

Do some things before each resolution:

Set CheckNumberOfSamples setting
Set UseNormalization setting

Reimplemented from elastix::BaseComponent.

◆ BeforeRegistration()

template<class TElastix >

void elastix::VarianceOverLastDimensionMetric< TElastix >::BeforeRegistration ( )

overridevirtual

Do some things before registration:

check the direction cosines

Reimplemented from elastix::BaseComponent.

◆ elxClassNameMacro()

template<class TElastix >

elastix::VarianceOverLastDimensionMetric< TElastix >::elxClassNameMacro ( "VarianceOverLastDimensionMetric< TElastix >" )

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "VarianceOverLastDimensionMetric")

◆ GetClassName()

template<class TElastix >

virtual const char * elastix::VarianceOverLastDimensionMetric< TElastix >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::VarianceOverLastDimensionImageMetric< TFixedImage, TMovingImage >.

◆ Initialize()

template<class TElastix >

void elastix::VarianceOverLastDimensionMetric< TElastix >::Initialize ( )

override

Sets up a timer to measure the initialization time and calls the Superclass' implementation.

◆ ITK_DISALLOW_COPY_AND_MOVE()

template<class TElastix >

elastix::VarianceOverLastDimensionMetric< TElastix >::ITK_DISALLOW_COPY_AND_MOVE ( VarianceOverLastDimensionMetric< TElastix > )

◆ itkStaticConstMacro() [1/2]

template<class TElastix >

elastix::VarianceOverLastDimensionMetric< TElastix >::itkStaticConstMacro	(	FixedImageDimension	,
		unsigned int	,
		FixedImageType::ImageDimension	)

The fixed image dimension.

◆ itkStaticConstMacro() [2/2]

template<class TElastix >

elastix::VarianceOverLastDimensionMetric< TElastix >::itkStaticConstMacro	(	MovingImageDimension	,
		unsigned int	,
		MovingImageType::ImageDimension	)

The moving image dimension.

◆ New()

template<class TElastix >

static Pointer elastix::VarianceOverLastDimensionMetric< TElastix >::New ( )

static

Method for creation through the object factory.

Field Documentation

◆ elxOverrideGetSelfMacro

template<class TElastix >

elastix::VarianceOverLastDimensionMetric< TElastix >::elxOverrideGetSelfMacro

private

Definition at line 184 of file elxVarianceOverLastDimensionMetric.h.

Detailed Description

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

◆ BSplineTransformBaseType

◆ CombinationTransformType

◆ ConstPointer

◆ FixedImageSizeType

◆ ITKBaseType

◆ Pointer

◆ ReducedDimensionBSplineTransformBaseType

◆ Self

◆ StackTransformType

◆ Superclass1

◆ Superclass2

Constructor & Destructor Documentation

◆ VarianceOverLastDimensionMetric()

◆ ~VarianceOverLastDimensionMetric()

Member Function Documentation

◆ BeforeEachResolution()

◆ BeforeRegistration()

◆ elxClassNameMacro()

◆ GetClassName()

◆ Initialize()

◆ ITK_DISALLOW_COPY_AND_MOVE()

◆ itkStaticConstMacro() [1/2]

◆ itkStaticConstMacro() [2/2]

◆ New()

Field Documentation

◆ elxOverrideGetSelfMacro