template<class TFixedImage, class TMovingImage>
class itk::SumSquaredTissueVolumeDifferenceImageToImageMetric< TFixedImage, TMovingImage >
Compute sum of square tissue volume difference between two images.
This Class is templated over the type of the fixed and moving images to be compared.
This metrics implements a mass-preserving image similarity term, as described by both Yin et al. and Gorbunova et al. Essentially, the similarity term is equivalent to the sum of squared differences between pixels in the moving and fixed images, except the intensity of the moving image is first scaled by the determinant of the spatial Jacobian to correct for density effects on image intensity. Gorbunova et al. provide the analytical gradient of the cost function with respect to the transform parameters, which is implemented here.
This implementation is based on the AdvancedImageToImageMetric, which means that:
- It uses the ImageSampler-framework
- It makes use of the compact support of B-splines, in case of B-spline transforms.
- Image derivatives are computed using either the B-spline interpolator's implementation or by nearest neighbor interpolation of a precomputed central difference image.
- A minimum number of samples that should map within the moving image (mask) can be specified.
References:
[1] Yin, Y., Hoffman, E. A., & Lin, C. L. (2009). Mass preserving nonrigid registration of CT lung images using cubic B-spline. Medical physics, 36(9), 4213-4222. [2] Gorbunova, V., Sporring, J., Lo, P., Loeve, M., Tiddens, H. A., Nielsen, M., Dirksen, A., de Bruijne, M. (2012). Mass preserving image registration for lung CT. Medical image analysis, 16(4), 786-795.
Definition at line 61 of file itkSumSquaredTissueVolumeDifferenceImageToImageMetric.h.
|
| using | ConstPointer = SmartPointer<const Self> |
| |
| using | DerivativeValueType |
| |
| using | FixedImageLimiterOutputType |
| |
| using | FixedImageLimiterType |
| |
| using | FixedImageMaskPointer |
| |
| using | FixedImageMaskType |
| |
| using | FixedImagePixelType |
| |
| using | ImageSampleContainerPointer |
| |
| using | ImageSampleContainerType |
| |
| using | ImageSamplerPointer |
| |
| using | ImageSamplerType |
| |
| using | InternalMatrixType = typename TransformType::InternalMatrixType |
| |
| using | JacobianOfSpatialHessianType = typename TransformType::JacobianOfSpatialHessianType |
| |
| using | JacobianOfSpatialJacobianType = typename TransformType::JacobianOfSpatialJacobianType |
| |
| using | MovingImageDerivativeScalesType |
| |
| using | MovingImageLimiterOutputType |
| |
| using | MovingImageLimiterType |
| |
| using | MovingImageMaskPointer |
| |
| using | MovingImageMaskType |
| |
| using | MovingImageRegionType |
| |
| using | Pointer = SmartPointer<Self> |
| |
| using | Self = SumSquaredTissueVolumeDifferenceImageToImageMetric |
| |
| using | SpatialHessianType = typename TransformType::SpatialHessianType |
| |
| using | SpatialJacobianType = typename TransformType::SpatialJacobianType |
| |
| using | Superclass = AdvancedImageToImageMetric<TFixedImage, TMovingImage> |
| |
| using | TransformType = typename Superclass::AdvancedTransformType |
| |
| using | AdvancedTransformType = AdvancedTransform<ScalarType, FixedImageDimension, MovingImageDimension> |
| |
| using | BSplineOrder1TransformPointer = typename BSplineOrder1TransformType::Pointer |
| |
| using | BSplineOrder1TransformType = AdvancedBSplineDeformableTransform<ScalarType, FixedImageDimension, 1> |
| |
| using | BSplineOrder2TransformPointer = typename BSplineOrder2TransformType::Pointer |
| |
| using | BSplineOrder2TransformType = AdvancedBSplineDeformableTransform<ScalarType, FixedImageDimension, 2> |
| |
| using | BSplineOrder3TransformPointer = typename BSplineOrder3TransformType::Pointer |
| |
| using | BSplineOrder3TransformType = AdvancedBSplineDeformableTransform<ScalarType, FixedImageDimension, 3> |
| |
| using | CombinationTransformType = AdvancedCombinationTransform<ScalarType, FixedImageDimension> |
| |
| using | ConstPointer = SmartPointer<const Self> |
| |
| using | DerivativeValueType = typename DerivativeType::ValueType |
| |
| using | FixedImageLimiterOutputType = typename FixedImageLimiterType::OutputType |
| |
| using | FixedImageLimiterPointer = typename FixedImageLimiterType::Pointer |
| |
| using | FixedImageLimiterType = LimiterFunctionBase<RealType, FixedImageDimension> |
| |
| using | FixedImageMaskConstPointer = SmartPointer<const FixedImageMaskType> |
| |
| using | FixedImageMaskPointer = SmartPointer<FixedImageMaskType> |
| |
| using | FixedImageMaskType = ImageMaskSpatialObject<Self::FixedImageDimension> |
| |
| using | FixedImagePixelType = typename FixedImageType::PixelType |
| |
| using | FixedImagePointer = typename FixedImageType::Pointer |
| |
| using | ImageSampleContainerPointer = typename ImageSamplerType::OutputVectorContainerPointer |
| |
| using | ImageSampleContainerType = typename ImageSamplerType::OutputVectorContainerType |
| |
| using | ImageSamplerPointer = typename ImageSamplerType::Pointer |
| |
| using | ImageSamplerType = ImageSamplerBase<FixedImageType> |
| |
| using | MovingImageDerivativeScalesType = FixedArray<double, Self::MovingImageDimension> |
| |
| using | MovingImageLimiterOutputType = typename MovingImageLimiterType::OutputType |
| |
| using | MovingImageLimiterPointer = typename MovingImageLimiterType::Pointer |
| |
| using | MovingImageLimiterType = LimiterFunctionBase<RealType, MovingImageDimension> |
| |
| using | MovingImageMaskConstPointer = SmartPointer<const MovingImageMaskType> |
| |
| using | MovingImageMaskPointer = SmartPointer<MovingImageMaskType> |
| |
| using | MovingImageMaskType = ImageMaskSpatialObject<Self::MovingImageDimension> |
| |
| using | MovingImagePointer = typename MovingImageType::Pointer |
| |
| using | MovingImageRegionType = typename MovingImageType::RegionType |
| |
| using | NumberOfParametersType = typename AdvancedTransformType::NumberOfParametersType |
| |
| using | Pointer = SmartPointer<Self> |
| |
| using | ScalarType = typename TransformType::ScalarType |
| |
| using | Self = AdvancedImageToImageMetric |
| |
| using | Superclass = ImageToImageMetric<TFixedImage, TMovingImage> |
| |
| using | ThreadInfoType = MultiThreaderBase::WorkUnitInfo |
| |
|
| virtual RealType | GetAirValue () const |
| |
| virtual const char * | GetClassName () const |
| |
| void | GetDerivative (const TransformParametersType ¶meters, DerivativeType &derivative) const override |
| |
| virtual RealType | GetTissueValue () const |
| |
| MeasureType | GetValue (const TransformParametersType ¶meters) const override |
| |
| void | GetValueAndDerivative (const TransformParametersType ¶meters, MeasureType &Value, DerivativeType &Derivative) const override |
| |
| void | GetValueAndDerivativeSingleThreaded (const TransformParametersType ¶meters, MeasureType &measure, DerivativeType &derivative) const |
| |
| virtual MeasureType | GetValueSingleThreaded (const TransformParametersType ¶meters) const |
| |
| | ITK_DISALLOW_COPY_AND_MOVE (SumSquaredTissueVolumeDifferenceImageToImageMetric) |
| |
| | itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension) |
| |
| | itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension) |
| |
| virtual void | SetAirValue (RealType _arg) |
| |
| virtual void | SetTissueValue (RealType _arg) |
| |
| virtual void | BeforeThreadedGetValueAndDerivative (const TransformParametersType ¶meters) const |
| |
| virtual const FixedImageLimiterType * | GetFixedImageLimiter () |
| |
| const FixedImageMaskType * | GetFixedImageMask () const override |
| |
| virtual double | GetFixedLimitRangeRatio () const |
| |
| ImageSamplerType * | GetImageSampler () const |
| |
| virtual const MovingImageDerivativeScalesType & | GetMovingImageDerivativeScales () |
| |
| virtual const MovingImageLimiterType * | GetMovingImageLimiter () |
| |
| const MovingImageMaskType * | GetMovingImageMask () const override |
| |
| virtual double | GetMovingLimitRangeRatio () const |
| |
| virtual double | GetRequiredRatioOfValidSamples () const |
| |
| virtual bool | GetScaleGradientWithRespectToMovingImageOrientation () const |
| |
| const AdvancedTransformType * | GetTransform () const override |
| |
| AdvancedTransformType * | GetTransform () override |
| |
| virtual bool | GetUseFixedImageLimiter () const |
| |
| virtual bool | GetUseImageSampler () const |
| |
| virtual const bool & | GetUseMetricSingleThreaded () |
| |
| virtual bool | GetUseMovingImageDerivativeScales () const |
| |
| virtual bool | GetUseMovingImageLimiter () const |
| |
| virtual const bool & | GetUseMultiThread () |
| |
| void | Initialize () override |
| |
| | ITK_DISALLOW_COPY_AND_MOVE (AdvancedImageToImageMetric) |
| |
| | itkStaticConstMacro (FixedImageDimension, unsigned int, TFixedImage::ImageDimension) |
| |
| | itkStaticConstMacro (MovingImageDimension, unsigned int, TMovingImage::ImageDimension) |
| |
| virtual void | SetFixedImageLimiter (FixedImageLimiterType *_arg) |
| |
| virtual void | SetFixedImageMask (const FixedImageMaskType *const arg) |
| |
| virtual void | SetFixedLimitRangeRatio (double _arg) |
| |
| virtual void | SetImageSampler (ImageSamplerType *_arg) |
| |
| virtual void | SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg) |
| |
| virtual void | SetMovingImageLimiter (MovingImageLimiterType *_arg) |
| |
| virtual void | SetMovingImageMask (const MovingImageMaskType *const arg) |
| |
| virtual void | SetMovingLimitRangeRatio (double _arg) |
| |
| virtual void | SetRequiredRatioOfValidSamples (double _arg) |
| |
| virtual void | SetScaleGradientWithRespectToMovingImageOrientation (bool _arg) |
| |
| virtual void | SetTransform (AdvancedTransformType *arg) |
| |
| virtual void | SetUseMetricSingleThreaded (bool _arg) |
| |
| virtual void | SetUseMovingImageDerivativeScales (bool _arg) |
| |
| virtual void | SetUseMultiThread (bool _arg) |
| |
| virtual void | UseMetricSingleThreadedOff () |
| |
| virtual void | UseMetricSingleThreadedOn () |
| |
| virtual void | UseMultiThreadOff () |
| |
| virtual void | UseMultiThreadOn () |
| |
|
| void | AfterThreadedGetValue (MeasureType &value) const override |
| |
| void | AfterThreadedGetValueAndDerivative (MeasureType &measure, DerivativeType &derivative) const override |
| |
| void | EvaluateJacobianOfSpatialJacobianDeterminantInnerProduct (const JacobianOfSpatialJacobianType &jacobianOfSpatialJacobian, const SpatialJacobianType &inverseSpatialJacobian, DerivativeType &jacobianOfSpatialJacobianDeterminant) const |
| |
| void | EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const override |
| |
| void | PrintSelf (std::ostream &os, Indent indent) const override |
| |
| | SumSquaredTissueVolumeDifferenceImageToImageMetric () |
| |
| void | ThreadedGetValue (ThreadIdType threadID) const override |
| |
| void | ThreadedGetValueAndDerivative (ThreadIdType threadId) const override |
| |
| void | UpdateValueAndDerivativeTerms (const RealType fixedImageValue, const RealType movingImageValue, const DerivativeType &imageJacobian, const NonZeroJacobianIndicesType &nzji, const RealType spatialJacobianDeterminant, const DerivativeType &jacobianOfSpatialJacobianDeterminant, MeasureType &measure, DerivativeType &deriv) const |
| |
| | ~SumSquaredTissueVolumeDifferenceImageToImageMetric () override=default |
| |
| | AdvancedImageToImageMetric () |
| |
| void | CheckForAdvancedTransform () |
| |
| void | CheckForBSplineInterpolator () |
| |
| void | CheckForBSplineTransform () const |
| |
| void | CheckNumberOfSamples (unsigned long wanted, unsigned long found) const |
| |
| virtual bool | EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const |
| |
| bool | EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const |
| |
| bool | FastEvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient, const ThreadIdType threadId) const |
| |
| virtual void | InitializeImageSampler () |
| |
| void | InitializeLimiters () |
| |
| virtual void | InitializeThreadingParameters () const |
| |
| virtual bool | IsInsideMovingMask (const MovingImagePointType &point) const |
| |
| | itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct) |
| |
| | itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct) |
| |
| void | LaunchGetValueAndDerivativeThreaderCallback () const |
| |
| void | LaunchGetValueThreaderCallback () const |
| |
| void | PrintSelf (std::ostream &os, Indent indent) const override |
| |
| void | SetFixedImageMask (const typename Superclass::FixedImageMaskType *) final |
| |
| void | SetFixedImageMask (typename Superclass::FixedImageMaskType *) final |
| |
| void | SetMovingImageMask (const typename Superclass::MovingImageMaskType *) final |
| |
| void | SetMovingImageMask (typename Superclass::MovingImageMaskType *) final |
| |
| virtual void | SetUseFixedImageLimiter (bool _arg) |
| |
| virtual void | SetUseImageSampler (bool _arg) |
| |
| virtual void | SetUseMovingImageLimiter (bool _arg) |
| |
| MovingImagePointType | TransformPoint (const FixedImagePointType &fixedImagePoint) const |
| |
| | ~AdvancedImageToImageMetric () override=default |
| |
Public Member Functions inherited from itk::AdvancedImageToImageMetric< TFixedImage, TMovingImage >
1.11.0 (9b424b03c9833626cd435af22a444888fbbb192d) 